hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mia/mia06062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0965  ( 159 res)   mia06062

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
Pkinase_C Protein kinase C terminal domain               46.7    5.2e-10   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Pkinase_C   1/1      96   142 ..     1    47 []    46.7  5.2e-10

Alignments of top-scoring domains:
Pkinase_C: domain 1 of 1, from 96 to 142: score 46.7, E = 5.2e-10
                   *->kvksptDTsNFDpeFTsepptltpppdsr.lssgkqleFvGFtYvnp
                      +++s +DTsNFD +F + ++   +p++++++ ++k++ F ++tY+++
   mKIAA0965    96    EIRSIDDTSNFD-DFPESDILQPVPNTTEpDYKSKDWVFLNYTYKRF 141  

                   e<-*
                   e   
   mKIAA0965   142 E    142  

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