hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00056/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0964  ( 986 res)   mbg00056

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GKAP     Guanylate-kinase-associated protein (GKAP) p   828.4   2.5e-245   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GKAP       1/1     669   986 .]     1   365 []   828.4 2.5e-245

Alignments of top-scoring domains:
GKAP: domain 1 of 1, from 669 to 986: score 828.4, E = 2.5e-245
                   *->EdrskavkkkklsSIGiQVddieesdkkeEsksaskFqSiGVQVEed
                      E++s+a +k+klsSIGiQ     +s      ++              
   mKIAA0964   669    ESHSEAIPKRKLSSIGIQLS---PS------SPN------------- 693  

                   kRsarFkRSnSvtaavqADldleDaadsslkstEDksLqpgrtarrqsse
                    Rs+++  S+S+++++++D+d++Da+dss+ks+E +sL p++t++++s++
   mKIAA0964   694 -RSSAP--SHSMSSRRDTDSDTQDANDSSCKSSE-RSL-PDCTSHPNSIS 738  

                   adaGPRAstvsvfktaqikralAydddyDldYEPPAldaSslPPPdPAPG
                   +da    ++++++k+aqikr+l+y+d++D++     l+aSslPPPdP   
   mKIAA0964   739 IDA----GPRQAPKIAQIKRNLSYGDNSDPA-----LEASSLPPPDP--- 776  

                   PGSGRRDSWmesssespaeaaqrSaCrRDGeWFLKLLqAEverLEGWCkQ
                           W+e+ss+spae+aq++aCrRDG+WFLKLLqAE+erLEGWC+Q
   mKIAA0964   777 --------WLETSSSSPAEPAQPGACRRDGYWFLKLLQAETERLEGWCCQ 818  

                   MerEakennLpEeiLgKirsAVGSAQLLmSQKfqQFreLCeqnLnPdAfP
                   M++E+kennL+Ee+LgK++sAVGSAQLLmSQKfqQFr+LCeqnLnPdA+P
   mKIAA0964   819 MDKETKENNLSEEVLGKVLSAVGSAQLLMSQKFQQFRGLCEQNLNPDANP 868  

                   rPTaQDLAGFWDLLQLSIEdismKFdELyqLKANsWklletPlKdKeEkk
                   rPTaQDLAGFWDLLQLSIEdismKFdELy+LKANsW+l+etP+K+KeEkk
   mKIAA0964   869 RPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLVETPEKRKEEKK 918  

                   aPPPVPKKPAkgkAalvrerSldavdkQRQEARKRLLAAKRAASvRqnSA
                   +PPPVPKKPAk+kAa++r++++da+dkQRQEARKRLLAAKRAASvRqnSA
   mKIAA0964   919 PPPPVPKKPAKSKAAVSRDKASDAGDKQRQEARKRLLAAKRAASVRQNSA 968  

                   TESAdSIEIYiPEAQTRL<-*
                   TESAdSIEIY+PEAQTRL   
   mKIAA0964   969 TESADSIEIYVPEAQTRL    986  

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