hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07840/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0962  ( 820 res)   mbg07840

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DnaJ     DnaJ molecular chaperone homology domain       115.1      8e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DnaJ       1/1      76   133 ..     1    72 []   115.1    8e-30

Alignments of top-scoring domains:
DnaJ: domain 1 of 1, from 76 to 133: score 115.1, E = 8e-30
                   *->tdyYeiLGvskdAsddeIKKAYRkLAlkyHPDKnpgdpelseeklpe
                       d+Y +LGvs++As+++IKKAY+kLA+++HPDKn+            
   mKIAA0962    76    FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK------------ 110  

                   eekeeAeekFkeIneAYevLsDpek<-*
                     +++Ae++F +I++AYe+Ls++ek   
   mKIAA0962   111 --DPGAEDRFIQISKAYEILSNEEK    133  

//