hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07840/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0962  ( 820 res)   mbg07840

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
DnaJ        DnaJ domain                                 137.4    2.6e-37   1
Thioredoxin Thioredoxin                                 -27.1      0.047   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
DnaJ          1/1      77   141 ..     1    79 []   137.4  2.6e-37
Thioredoxin   1/1     191   293 ..     1   114 []   -27.1    0.047

Alignments of top-scoring domains:
DnaJ: domain 1 of 1, from 77 to 141: score 137.4, E = 2.6e-37
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktlerae
                      d+Y +LGv+r+As+++IKKAY+kLA+++HPDKN++++          
   mKIAA0962    77    DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG---------- 113  

                   skeeAeekFkeineAYevLsDpekRaiYDqyg<-*
                       Ae++F +i++AYe+Ls++ekR +YD yg   
   mKIAA0962   114 ----AEDRFIQISKAYEILSNEEKRTNYDHYG    141  

Thioredoxin: domain 1 of 1, from 191 to 293: score -27.1, E = 0.047
                   *->vvvvltdenFdeevlkaksdkpVLVdFyApWCGpCKmlAPeyeklAq
                      +  + ++e  +e   +   + p L++ + +WC  C +++P++++  q
   mKIAA0962   191    HFSHYVNEVLPE--SF---KRPYLIKITSDWCFSCIHIEPVWKEVVQ 232  

                   eykgesddvkfaKVDaDenpkdlAskygVrgfPTlkffknGkkepvdyvg
                   e+ g    v +  V a  +   lA   g ++ P ++ +  Gk   + ++ 
   mKIAA0962   233 ELEGL--GVGIGVVHAGYER-RLAHHLGAHSTPSILGVISGK---ITFFH 276  

                   GArtkddLvafikkhlg<-*
                    A   + L++f+++ l    
   mKIAA0962   277 NAVVHENLRQFVESLLP    293  

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