hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph04182/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0961  ( 486 res)   mph04182

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    217.9    8.8e-61  13

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/13    125   147 ..     1    23 []    24.7    0.013
ZnF_C2H2   2/13    153   175 ..     1    23 []    25.7   0.0063
ZnF_C2H2   3/13    181   203 ..     1    23 []    21.6     0.11
ZnF_C2H2   4/13    209   231 ..     1    23 []    26.6   0.0034
ZnF_C2H2   5/13    237   257 ..     1    23 []    15.4      5.8
ZnF_C2H2   6/13    265   287 ..     1    23 []    15.5      5.6
ZnF_C2H2   7/13    293   315 ..     1    23 []    25.2   0.0089
ZnF_C2H2   8/13    321   343 ..     1    23 []    24.9    0.011
ZnF_C2H2   9/13    349   371 ..     1    23 []    23.5     0.03
ZnF_C2H2  10/13    377   399 ..     1    23 []    23.4    0.031
ZnF_C2H2  11/13    405   427 ..     1    23 []    24.4    0.016
ZnF_C2H2  12/13    433   455 ..     1    23 []    26.2   0.0047
ZnF_C2H2  13/13    461   483 ..     1    23 []    24.4    0.016

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 13, from 125 to 147: score 24.7, E = 0.013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk f+ +++L+ H+r+H   
   mKIAA0961   125    YECGE-CGKAFKVRqQLTFHQRIH    147  

ZnF_C2H2: domain 2 of 13, from 153 to 175: score 25.7, E = 0.0063
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++  +L+rH+r+H   
   mKIAA0961   153    YECKE-CGKAFRQCaHLNRHQRIH    175  

ZnF_C2H2: domain 3 of 13, from 181 to 203: score 21.6, E = 0.11
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C k f+  ++L+ H+r+H   
   mKIAA0961   181    YECKK-CAKIFTCSsDLRGHQRSH    203  

ZnF_C2H2: domain 4 of 13, from 209 to 231: score 26.6, E = 0.0034
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f+ +++L  H+r+H   
   mKIAA0961   209    YDCKE-CGKAFRVRgQLMLHQRIH    231  

ZnF_C2H2: domain 5 of 13, from 237 to 257: score 15.4, E = 5.8
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgksf++  +L+rH+r     
   mKIAA0961   237    YACTE-CGKSFRQVaHLTRHQR--    257  

ZnF_C2H2: domain 6 of 13, from 265 to 287: score 15.5, E = 5.6
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg+ f   + L+ H + H   
   mKIAA0961   265    HECKE-CGRAFLCStGLRLHHKLH    287  

ZnF_C2H2: domain 7 of 13, from 293 to 315: score 25.2, E = 0.0089
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f+ +++L+ H r+H   
   mKIAA0961   293    YDCKE-CGKAFRVRqQLTLHERIH    315  

ZnF_C2H2: domain 8 of 13, from 321 to 343: score 24.9, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk+fs+  +L+ H+r+H   
   mKIAA0961   321    FDCKE-CGKTFSRGyHLTLHQRIH    343  

ZnF_C2H2: domain 9 of 13, from 349 to 371: score 23.5, E = 0.03
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C k f+++++L+ H+ +H   
   mKIAA0961   349    YECKE-CRKFFRRYsELISHQGIH    371  

ZnF_C2H2: domain 10 of 13, from 377 to 399: score 23.4, E = 0.031
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f+  ++L++H+ +H   
   mKIAA0961   377    YDCKE-CGKAFRLFsQLTQHQSIH    399  

	[output cut off at A = 10 top alignments]
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