hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph04182/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0961  ( 486 res)   mph04182

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         280.3    2.4e-80  13

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/13    125   147 ..     1    24 []    31.0  2.7e-05
zf-C2H2    2/13    153   175 ..     1    24 []    35.4  1.3e-06
zf-C2H2    3/13    181   203 ..     1    24 []    22.4    0.011
zf-C2H2    4/13    209   231 ..     1    24 []    32.0  1.4e-05
zf-C2H2    5/13    237   259 ..     1    24 []    19.8    0.066
zf-C2H2    6/13    265   287 ..     1    24 []    13.0      5.5
zf-C2H2    7/13    293   315 ..     1    24 []    30.1  5.2e-05
zf-C2H2    8/13    321   343 ..     1    24 []    32.6  9.3e-06
zf-C2H2    9/13    349   371 ..     1    24 []    27.9  0.00024
zf-C2H2   10/13    377   399 ..     1    24 []    29.1   0.0001
zf-C2H2   11/13    405   427 ..     1    24 []    28.8  0.00013
zf-C2H2   12/13    433   455 ..     1    24 []    32.3  1.1e-05
zf-C2H2   13/13    461   483 ..     1    24 []    30.9    3e-05

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 13, from 125 to 147: score 31.0, E = 2.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +Cgk+F+ + +L+ H+r+H   
   mKIAA0961   125    YECG-ECGKAFKVRQQLTFHQRIH    147  

zf-C2H2: domain 2 of 13, from 153 to 175: score 35.4, E = 1.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F++ ++L+rH+r+H   
   mKIAA0961   153    YECK-ECGKAFRQCAHLNRHQRIH    175  

zf-C2H2: domain 3 of 13, from 181 to 203: score 22.4, E = 0.011
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C k F+ +s+L+ H+r+H   
   mKIAA0961   181    YECK-KCAKIFTCSSDLRGHQRSH    203  

zf-C2H2: domain 4 of 13, from 209 to 231: score 32.0, E = 1.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cgk+F+ +++L  H+r+H   
   mKIAA0961   209    YDCK-ECGKAFRVRGQLMLHQRIH    231  

zf-C2H2: domain 5 of 13, from 237 to 259: score 19.8, E = 0.066
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +CgksF++ ++L+rH+r     
   mKIAA0961   237    YACT-ECGKSFRQVAHLTRHQRLN    259  

zf-C2H2: domain 6 of 13, from 265 to 287: score 13.0, E = 5.5
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cg++F  +  L+ H + H   
   mKIAA0961   265    HECK-ECGRAFLCSTGLRLHHKLH    287  

zf-C2H2: domain 7 of 13, from 293 to 315: score 30.1, E = 5.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cgk+F+ + +L+ H r+H   
   mKIAA0961   293    YDCK-ECGKAFRVRQQLTLHERIH    315  

zf-C2H2: domain 8 of 13, from 321 to 343: score 32.6, E = 9.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cgk+Fsr ++L+ H+r+H   
   mKIAA0961   321    FDCK-ECGKTFSRGYHLTLHQRIH    343  

zf-C2H2: domain 9 of 13, from 349 to 371: score 27.9, E = 0.00024
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C k F+r s+L +H+ +H   
   mKIAA0961   349    YECK-ECRKFFRRYSELISHQGIH    371  

zf-C2H2: domain 10 of 13, from 377 to 399: score 29.1, E = 0.0001
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cgk+F+  s+L++H+ +H   
   mKIAA0961   377    YDCK-ECGKAFRLFSQLTQHQSIH    399  

zf-C2H2: domain 11 of 13, from 405 to 427: score 28.8, E = 0.00013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC  +C k+F+  s+L++H+ +H   
   mKIAA0961   405    YKCM-ECEKTFRLLSQLTQHQSIH    427  

zf-C2H2: domain 12 of 13, from 433 to 455: score 32.3, E = 1.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cgk+F+ +s+L +H+r+H   
   mKIAA0961   433    YDCK-ECGKAFRLHSSLIQHQRIH    455  

zf-C2H2: domain 13 of 13, from 461 to 483: score 30.9, E = 3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C+k+F+++s+L+ H+r+H   
   mKIAA0961   461    YKCT-ECKKAFRQHSHLTYHQRIH    483  

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