hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg08685/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0960 ( 1668 res) mbg08685 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TSP_1 Thrombospondin type 1 domain 158.9 8.6e-44 11 Toxin_1 Snake toxin -12.3 0.36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TSP_1 1/11 210 258 .. 1 55 [] 56.7 5.1e-13 TSP_1 2/11 376 424 .. 1 55 [] 20.8 0.0013 TSP_1 3/11 528 585 .. 1 55 [] 10.0 0.026 TSP_1 4/11 650 706 .. 1 55 [] 23.2 0.00068 TSP_1 5/11 787 842 .. 1 55 [] 20.5 0.0014 TSP_1 6/11 922 970 .. 1 55 [] 14.8 0.0069 TSP_1 7/11 1051 1102 .. 1 55 [] 34.0 3.4e-06 TSP_1 8/11 1111 1174 .. 1 55 [] -0.5 0.47 TSP_1 9/11 1181 1230 .. 1 55 [] 4.2 0.13 TSP_1 10/11 1301 1351 .. 1 55 [] 47.3 3.4e-10 TSP_1 11/11 1429 1485 .. 1 55 [] 5.7 0.085 Toxin_1 1/1 1468 1530 .. 1 69 [] -12.3 0.36 Alignments of top-scoring domains: TSP_1: domain 1 of 11, from 210 to 258: score 56.7, E = 5.1e-13 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s++s+WS+CS TCG+G + R+R +++p Pq +gg+ C+ ++ ++ mKIAA0960 210 SEFSPWSECSRTCGSGLQHRTRHVVAP-PQ-YGGSGCPNLTE---FQ 251 aCdmmdkC<-* +C +C mKIAA0960 252 VC-QSNPC 258 TSP_1: domain 2 of 11, from 376 to 424: score 20.8, E = 0.0013 *->spWseWSpCSVTC....G.kGirtRqRvcnspaPqkkggepCtgdvq s+W eWSpCS+TC++ +++ G+r+R+R++ ++P g+ + ++ mKIAA0960 376 SEWLEWSPCSKTChdvtSpTGTRVRTRTIT-QFPI---GSEKECPAL 418 eleteaCdmmdkC<-* e ++++C mKIAA0960 419 E-------EKEPC 424 TSP_1: domain 3 of 11, from 528 to 585: score 10.0, E = 0.026 *->spWseWSpCSV.TC....G.kGirtRqRvcnspaPqkkggepCtgdv spWs W pC+ + C++++G+kG + R+R++ ++ P gg+ tg+ mKIAA0960 528 SPWSAWGPCTYeNCndqqGkKGFKLRKRRITNE-P--TGGSGATGNC 571 qe.leteaCdmmdkC<-* le +C + + C mKIAA0960 572 PHlLEAIPC-EEPSC 585 TSP_1: domain 4 of 11, from 650 to 706: score 23.2, E = 0.00068 *->spWseWSpCSVTCG....kGirtRqRvcnspaPqk.kggepCtgdvq s Ws WS+CS TC++++++G +tR R++ + a ++gg C+ mKIAA0960 650 SAWSSWSSCSHTCSgkttEGKQTRARSILAYA--GeEGGIRCPNISA 694 eleteaCdmmdkC<-* e++ C + ++C mKIAA0960 695 LQEVRSC-NEHPC 706 TSP_1: domain 5 of 11, from 787 to 842: score 20.5, E = 0.0014 *->spWseWSpCSVTCGkG.....irtRqRvcnspaPqkkggepCtgdvq +p s W+pC +C +G+++ + ++RqRv+ + P gg+ C ++ mKIAA0960 787 TPYSDWTPCPSSCREGdsgarKQSRQRVIIQL-PA-NGGKECSDPLY 831 eleteaCdmmdkC<-* e +aC+ + C mKIAA0960 832 E--EKACEAPPTC 842 TSP_1: domain 6 of 11, from 922 to 970: score 14.8, E = 0.0069 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe..le + Ws S+C+ CG +rtR+R +++++ k++e C+ + + +e mKIAA0960 922 TSWSKFSSCNGDCGA-VRTRKRAIVGKS---KKKEKCKNSHLYplIE 964 teaCdmmdkC<-* t+ C +C mKIAA0960 965 TQYC----PC 970 TSP_1: domain 7 of 11, from 1051 to 1102: score 34.0, E = 3.4e-06 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepC.tgdvqelet s+Ws WS CS++CG+G+++R + + P gg pC+++d+++ + mKIAA0960 1051 SEWSNWSRCSKSCGSGVKVRSKWLREK-PY-NGGRPCpKLDHVN-QA 1094 eaCdmmdkC<-* ++ ++ +C mKIAA0960 1095 QVY-EVVPC 1102 TSP_1: domain 8 of 11, from 1111 to 1174: score -0.5, E = 0.47 *->spWseWSpCSVT.......CGkGirtRqRvcnspaPqkkggepCtgd ++++WS C VT + +++CG+G++tR+ +c ++ ++ + + mKIAA0960 1111 WVTEPWSVCKVTfvdmrdnCGEGVQTRKVRCMQN------TADGPSE 1151 vqe..........leteaCdmmdkC<-* ++e+ ++++ +l ++ C + +C mKIAA0960 1152 HVEdylcdpedmpLGSREC--KLPC 1174 TSP_1: domain 9 of 11, from 1181 to 1230: score 4.2, E = 0.13 *->spWseWSpCSVTCG.kGirtRqR.vcnspaPqkkggepCtgdvqele s+W++W+ C +C ++G+r+R + + +pa ++g C++ v+ mKIAA0960 1181 SEWGPWT-CALPCNpSGSRQRSAdPIRQPA---DEGRACPDAVE--- 1220 teaCdmmdkC<-* e+C + C mKIAA0960 1221 KEPCSLNKNC 1230 TSP_1: domain 10 of 11, from 1301 to 1351: score 47.3, E = 3.4e-10 *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggepCtgdvqelet s+Ws WS+CS TCG G ++R+R++ +p++ +g pC+ ++ + mKIAA0960 1301 SDWSSWSQCSQTCGlTGKMIRKRTVTQPFQ--GDGRPCPSLMEQ--S 1343 eaCdmmdkC<-* ++C +++C mKIAA0960 1344 KPC-PVKPC 1351 TSP_1: domain 11 of 11, from 1429 to 1485: score 5.7, E = 0.085 *->spWseWSpCSVTC......G.kGirtRqRvcnspaPqk.kggepCtg +Ws WS C TC ++++ G +Gi++R R + + ++ C++ mKIAA0960 1429 NDWSSWSLCQLTCvngedlGfGGIQVRSRAVIIQ---ElENQHLCPE 1472 dvqeleteaCdmmdkC<-* + e t+ C C mKIAA0960 1473 QMLE--TKSC-DDGQC 1485 Toxin_1: domain 1 of 1, from 1468 to 1530: score -12.3, E = 0.36 *->liCyntpsqpkttktCPeGeNlCYkK..........twcdaFChqsr + +p+q tk C +G+ CY + + ++ ++ ++C +s mKIAA0960 1468 ---HLCPEQMLETKSCDDGQ--CY-EykwvasawkgSSRTVWCQRSD 1508 gkrieRGCaATCPtvkplgvkikCCsTDk.CNp<-* g+ ++ GC v+ ++ TD++CNp mKIAA0960 1509 GINVTGGCL----VVSQ-PD------TDRsCNP 1530 //