hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mid/mid17095/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0959 ( 333 res) mid17095 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RA Ras association (RalGDS/AF-6) domain 99.8 3.1e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RA 1/1 213 300 .. 1 102 [] 99.8 3.1e-25 Alignments of top-scoring domains: RA: domain 1 of 1, from 213 to 300: score 99.8, E = 3.1e-25 *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd dt+++r++v+d ++g++yk+++++++++++ Viq+++ k++l++ mKIAA0959 213 DTCIIRISVED----NNGNMYKSIMLTSQDKTPAVIQRAMSKHNLES 255 edpeeYvLvevlpsggkErvLlddenPlqlqklwprdaksprqsslrFvL + +eeY+Lv+v s++kE v++d +n++++++ + ++ +F L mKIAA0959 256 DPAEEYELVQVI-SEDKELVIPDSANVFYAMNSQVNF---------DFIL 295 rkrdd<-* rk+++ mKIAA0959 296 RKKNS 300 //