hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid17095/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0959  ( 333 res)   mid17095

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RA       Ras association (RalGDS/AF-6) domain            70.6    3.4e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RA         1/1     213   300 ..     1    98 []    70.6  3.4e-17

Alignments of top-scoring domains:
RA: domain 1 of 1, from 213 to 300: score 70.6, E = 3.4e-17
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      d++++r+  ed++ ++yk+i++++++ ++ Vi+ ++ K++l+ d  e
   mKIAA0959   213    DTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAE 259  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqvrsrFlLrrre
                   +y+Lv    +++++++e  v+pd++++++++     ++qv+  F+Lr+++
   mKIAA0959   260 EYELV----QVISEDKEL-VIPDSANVFYAM-----NSQVNFDFILRKKN 299  

                   d<-*
                       
   mKIAA0959   300 S    300  

//