hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01140/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0957  ( 713 res)   mfj01140

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 190.9      2e-53   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/7      42    74 ..     1    33 []    50.8  2.9e-11
Ank        2/7      75   107 ..     1    33 []    21.8    0.016
Ank        3/7     108   140 ..     1    33 []    40.0  5.4e-08
Ank        4/7     141   173 ..     1    33 []    24.8   0.0021
Ank        5/7     174   206 ..     1    33 []    33.0  6.8e-06
Ank        6/7     207   239 ..     1    33 []    41.0  2.6e-08
Ank        7/7     240   270 ..     1    33 []     0.1    2e+02

Alignments of top-scoring domains:
Ank: domain 1 of 7, from 42 to 74: score 50.8, E = 2.9e-11
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+TPLHlAa +g+l+vv+ Ll++G+dl++qdd   
   mKIAA0957    42    HGRTPLHLAANKGHLSVVQILLKAGCDLDVQDD    74   

Ank: domain 2 of 7, from 75 to 107: score 21.8, E = 0.016
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +T+LH A   gn+e+++ L+  G+ l+ qd+   
   mKIAA0957    75    GDQTALHRATVVGNTEILTALIREGCALDRQDK    107  

Ank: domain 3 of 7, from 108 to 140: score 40.0, E = 5.4e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG+T+LH Aa +g  + +klL+++GA++ a+++   
   mKIAA0957   108    DGNTALHEAAWHGFSQSAKLLVKAGANVLARNK    140  

Ank: domain 4 of 7, from 141 to 173: score 24.8, E = 0.0021
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LHlA+++ + +  + Ll  G   +++++   
   mKIAA0957   141    AGNTALHLACQNSHSQSTRILLLGGSRADLKNN    173  

Ank: domain 5 of 7, from 174 to 206: score 33.0, E = 6.8e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH+Aa++++l+vv+lLl++ ++++ ++    
   mKIAA0957   174    AGDTCLHVAARYNHLSVVRLLLNAFCSVHEKNQ    206  

Ank: domain 6 of 7, from 207 to 239: score 41.0, E = 2.6e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH+Aa  ++++vvk Ll++GAd  ++++   
   mKIAA0957   207    AGDTALHVAAALNHKKVVKVLLEAGADTTIVNN    239  

Ank: domain 7 of 7, from 240 to 270: score 0.1, E = 2e+02
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPL  A +++n+ev+ lL +  A   ++     
   mKIAA0957   240    AGQTPLETARYHNNPEVALLLTK--APQILRFS    270  

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