hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02576/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0952  ( 547 res)   mbg02576

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHR      PHR domain                                     289.4    4.6e-83   1
BTB      BTB/POZ domain                                 104.9    1.6e-27   1
BACK     BTB And C-terminal Kelch                        -2.0     0.0065   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1     140   245 ..     1   135 []   104.9  1.6e-27
BACK       1/1     250   360 ..     1   103 []    -2.0   0.0065
PHR        1/1     401   547 .]     1   163 []   289.4  4.6e-83

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 140 to 245: score 104.9, E = 1.6e-27
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                       n+l+      DV +vvg  +g    +++++ HK vLa  S++F+a+
   mKIAA0952   140    NNDLMA-----DVHFVVGPPGG----TQRLPGHKYVLAVGSSVFHAM 177  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F g +      e+++   ei ++dv+p +f a+L++iY++e+++      
   mKIAA0952   178 FYGEL-----AEDKD---EIRIPDVEPAAFLAMLKYIYCDEIDLA----- 214  

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                          ++v + L++A +++ +p+l ++C +fl +sl   
   mKIAA0952   215 ------ADTVLATLYAA-KKYIVPHLARACVNFLETSL    245  

BACK: domain 1 of 1, from 250 to 360: score -2.0, E = 0.0065
                   *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie
                      ++ +++ +  +  ++L +++++ i+   +  +kse F +++++ L +
   mKIAA0952   250    ACVLLSQSCLFEEPDLTQRCWEVIDAQAELALKSEGFCDIDFQTLES 296  

                   lLssDeLnVpsEeeVfeAvmrWvkhd.........venRkkhlpeLLshV
                   +L+++ L  ++E +VfeA+++W   + ++++   + en +k l + L ++
   mKIAA0952   297 ILRRETL-NAKEIVVFEAALNWAEVEcqrqdlalsIENKRKVLGKALYLI 345  

                   RLpLLspkyLlevve<-*
                   R+p +  + + +  +   
   mKIAA0952   346 RIPTMALDDFANGAA    360  

PHR: domain 1 of 1, from 401 to 547: score 289.4, E = 4.6e-83
                   *->nRFqrvsaRggtWgySngsvDAIaFsVDkrGIfivGfGlYGgisGey
                      +RFq++++R+++W+y +g++D+I+F+VDkr +fi+GfGlYG+++G++
   mKIAA0952   401    HRFQSCAYRSNQWRY-RGRCDSIQFAVDKR-VFIAGFGLYGSSCGSA 445  

                   eyklkllydlgtHagdldhsekwttLesvtteyssDcGasetaevrFdeP
                   ey+ k+         +l+++++  +L+++ ++y+sD G+s+t++v+F++P
   mKIAA0952   446 EYSAKI---------ELKRQGV--VLGQNLSKYFSD-GSSNTFPVWFEYP 483  

                   VlikpnvwYavrarisGpslSdcGdkGmtsVstpdGkVtFqFsssslSnN
                   V+i+p+++Y+++++++G++lS++G++Gmt+V++  GkVt+qF++ss+S+N
   mKIAA0952   484 VQIEPDTFYTASVVLDGNELSYFGQEGMTEVQC--GKVTVQFQCSSDSTN 531  

                   GTtVqrGQIPeILYYl<-*
                   GT+Vq+GQIPe+++Y+   
   mKIAA0952   532 GTGVQGGQIPELIFYA    547  

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