hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj01090/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0950  ( 345 res)   mbj01090

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UPF0005  Uncharacterised protein family UPF0005         113.9      3e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UPF0005    1/1     124   344 ..     1   460 []   113.9    3e-30

Alignments of top-scoring domains:
UPF0005: domain 1 of 1, from 124 to 344: score 113.9, E = 3e-30
                   *->wklgkqdprRvvyalkvglaLlLvsllayirpvldsvgenaiwailt
                      ++  +  ++R+vy ++  ++Ll++++++ ++++ d v +++  +   
   mKIAA0950   124    DQKVRRLFIRKVYTIL-LVQLLVTLAVVALFTFCDVVKDYVQANPGW 169  

                   vvvvlefsLvclivLSccvgatlnkglnrvlltlfAgllgvgvgpiasmy
                   +   ++++++    L+cc g ++ +++n++llt+f++++++  g+++s y
   mKIAA0950   170 YWASYAVFFATYLTLACCSGPRRHFPWNLILLTIFTLSMAYLTGMLSSYY 219  

                   gaifepiilvisaFgitaavfffrslpslktryDygfqlgfiLtfalivl
                   +       +v+ +++ita+v+ +++++s++t++D+++ + ++L++ l++l
   mKIAA0950   220 NT-----TSVLLCLVITALVCLSVTIFSFQTKFDFTS-CQGVLFVLLMTL 263  

                   sgfrigaltnlff.WtAssrlsliisgagillfvgyilydtqaiedlhkl
                   +  ++     ++++++  ++l+++++++g+ +f++++++dtq+++++++ 
   mKIAA0950   264 FFSGLL--LAVLLpFQYVPWLHTVYAVLGAGVFTLFLAFDTQLLMGNRRH 311  

                   iannfeklAdSLEgCVneYLeeeeyerepskiltyeasedpvysgYrSvL
                    +                                                
   mKIAA0950   312 SL------------------------------------------------ 313  

                   nSkspeeyiAnfAkWEPpHGrfkfrhPWknYVKvGgalRhCAytVmALHG
                      speeyi                                         
   mKIAA0950   314 ---SPEEYI----------------------------------------- 319  

                   CilsEiQAPeelRqkFkeelqrvsEgaKvLreLaeslkkMrklspsilld
                                                                     
   mKIAA0950     - -------------------------------------------------- -    

                   dvhsAaeeLqskIdsksyLlvnSesweiikrttetsgeameresnesmml
                                                                     
   mKIAA0950     - -------------------------------------------------- -    

                   lkreswpsrsaateeeseerqvdleermkslEsaeaLSlaaaasLyldfv
                                                          ++a+++yld++
   mKIAA0950   320 ---------------------------------------FGALNIYLDII 330  

                   nlFlslLeilgels<-*
                   ++F   L+ +g+++   
   mKIAA0950   331 YIFTFFLQLFGTNR    344  

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