hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj00976/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0948  ( 655 res)   mpj00976

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
FAST_Leu-rich FAST kinase leucine-rich                  279.6    3.9e-80   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
FAST_Leu-rich   1/1     392   560 ..     1   184 []   279.6  3.9e-80

Alignments of top-scoring domains:
FAST_Leu-rich: domain 1 of 1, from 392 to 560: score 279.6, E = 3.9e-80
                   *->iakiLlpFgrLNYvyKPpna.eeflskleevLtrelhtlsqYPeslv
                      ++++Ll+F+rLN++  P++++++f+s+++e+L++ l++l+  P+++v
   mKIAA0948   392    VCSVLLAFARLNFH--PEQEeDQFFSMVHEKLDPVLGSLE--PALQV 434  

                   dlvwSLclleyfPealLnqvlspgFiqrllgsksvlyaskdarvlqkLlq
                   dlvw+Lc+l++++e++L++vl+pg+++r+l+sks    +kd++++qkL++
   mKIAA0948   435 DLVWALCVLQHVHETELHTVLHPGLHARFLESKS----PKDQSTFQKLVH 480  

                   LnttvkLEcPeYkgPlLptryqvpsflqpliklrepldlsskkevaetLF
                   +ntt++LE+PeYkgP+Lp+++++p++ +p++k+++pl    +ke++et  
   mKIAA0948   481 INTTALLEHPEYKGPFLPASAVAPIP-SPSNKKMTPL----QKELQET-- 523  

                   LLkqLLGgenkfslnVltPygyviDfEihlDangnpLP<-*
                    Lk+LLG+++k+sl+V+t+yg+v+D+E++lDa+g++LP   
   mKIAA0948   524 -LKALLGNTDKGSLEVATQYGWVLDAEVLLDADGHFLP    560  

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