hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbx/mbx00001/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0946  ( 465 res)   mbx00001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                133.3    2.6e-35   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/5     125   154 ..     1    30 []    21.5     0.12
ANK        2/5     159   188 ..     1    30 []    29.9  0.00034
ANK        3/5     192   221 ..     1    30 []    30.2  0.00029
ANK        4/5     225   255 ..     1    30 []    20.0     0.34
ANK        5/5     260   289 ..     1    30 []    33.6  2.8e-05

Alignments of top-scoring domains:
ANK: domain 1 of 5, from 125 to 154: score 21.5, E = 0.12
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      ++ T LH+Aa n+++++vk+ ++kga ++    
   mKIAA0946   125    ENVTLLHWAAINNRIDLVKYYISKGAIVDQ    154  

ANK: domain 2 of 5, from 159 to 188: score 29.9, E = 0.00034
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       + TpLH+A + g+l++v  L+++gad+ +   
   mKIAA0946   159    LNSTPLHWATRQGHLSMVVQLMKYGADPSL    188  

ANK: domain 3 of 5, from 192 to 221: score 30.2, E = 0.00029
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G++++HlAa+ g+ ++v +L+ kg d+++   
   mKIAA0946   192    EGCSCIHLAAQFGHTSIVAYLIAKGQDVDM    221  

ANK: domain 4 of 5, from 225 to 255: score 20.0, E = 0.34
                   *->dGrTpLHlAaen.gnlevvklLldkgadina<-*
                      +G+TpL++Aa+++ +++  +lLl  ++++n+   
   mKIAA0946   225    NGMTPLMWAAYRtHSVDPTRLLLTFNVSVNL    255  

ANK: domain 5 of 5, from 260 to 289: score 33.6, E = 2.8e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + +T+LH+A+  gn  v+ lLl++g++++a   
   mKIAA0946   260    HKNTALHWAVLAGNTTVISLLLEAGGNVDA    289  

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