hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbx/mbx00001/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0946  ( 465 res)   mbx00001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 141.0    2.1e-38   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/5     125   157 ..     1    33 []    19.7    0.071
Ank        2/5     159   191 ..     1    33 []    28.8  0.00013
Ank        3/5     192   224 ..     1    33 []    29.8  6.5e-05
Ank        4/5     225   258 ..     1    33 []    26.0  0.00085
Ank        5/5     260   292 ..     1    33 []    41.3  2.2e-08

Alignments of top-scoring domains:
Ank: domain 1 of 5, from 125 to 157: score 19.7, E = 0.071
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +  T LH+Aa+++++++vk+ +s+GA ++       
   mKIAA0946   125    ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG    157  

Ank: domain 2 of 5, from 159 to 191: score 28.8, E = 0.00013
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                         TPLH+A + g+l++v  L+++GAd+ + d    
   mKIAA0946   159    LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG    191  

Ank: domain 3 of 5, from 192 to 224: score 29.8, E = 6.5e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G++++HlAa+ g++++v +L+ +G d+++ d    
   mKIAA0946   192    EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ    224  

Ank: domain 4 of 5, from 225 to 258: score 26.0, E = 0.00085
                   *->dGfTPLHlAalrg.nlevvklLlsqGAdlnaqdd<-*
                      +G+TPL++Aa+r ++++  +lLl    ++n+ d+   
   mKIAA0946   225    NGMTPLMWAAYRThSVDPTRLLLTFNVSVNLGDK    258  

Ank: domain 5 of 5, from 260 to 292: score 41.3, E = 2.2e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      + +T+LH+A+l gn+ v++lLl++G +++aq+    
   mKIAA0946   260    HKNTALHWAVLAGNTTVISLLLEAGGNVDAQNV    292  

//