hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm04066/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0945  ( 806 res)   mpm04066

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BAH      Bromo adjacent homology domain                  47.4    1.8e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BAH        1/1     650   805 ..     1   163 []    47.4  1.8e-09

Alignments of top-scoring domains:
BAH: domain 1 of 1, from 650 to 805: score 47.4, E = 1.8e-09
                   *->etisvGDfVlvepddfknreeKagrnvgdepyyvarIeeifetkkgk
                      eti+v D+Vl+++     r+         +++yva+I  ++e+++ +
   mKIAA0945   650    ETIRVRDTVLLKSGP---RK--------TSTPYVAKISALWENPESG 685  

                   kskkvrvrwfyRPedtvlgkarllereprlkdyafdknEvflsecPcedd
                      +  + w+yRPe  ++g+ +++  +         +nEvf+s +  +d 
   mKIAA0945   686 -ELMMSLLWYYRPEHLQGGRSPSMHEPL--------QNEVFASRH--QDQ 724  

                   vpledIigkCnVlklsdyeklrpeesnsda.klerakaEERKk.......
                   + + +I++kC Vl +++y++ + + ++  +++ +      RK+   +++ 
   mKIAA0945   725 NSVACIEEKCYVLTFAEYCRFCAMAKRRGEgLPS------RKTalvppsa 768  

                   .............kgeedvFfcellYdptkgsFkklp<-*
                   + +++++++ ++++++e vF+c+ +Yd  +g+  k p   
   mKIAA0945   769 dystpphrtvpedTDPELVFLCRHVYDFRHGRILKNP    805  

//