hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm04066/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0945  ( 806 res)   mpm04066

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BAH      BAH domain                                      40.0    5.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BAH        1/1     650   805 ..     1   158 []    40.0  5.2e-08

Alignments of top-scoring domains:
BAH: domain 1 of 1, from 650 to 805: score 40.0, E = 5.2e-08
                   *->etysvGDfVlvepddpknleetKagrnvalepyyvarIeeivelfed
                      et++v D+Vl+ + +     ++         ++yva+I  +   +e+
   mKIAA0945   650    ETIRVRDTVLLKSGP-----RK-------TSTPYVAKISAL---WEN 681  

                   sdgskskmlhvrwfyRPeetPyikslgrafnkDirEVflsdecddvpled
                   +  + + m ++ w+yRPe+    ++ + ++ + ++EVf+s+++d +++ +
   mKIAA0945   682 PESG-ELMMSLLWYYRPEHL-QGGRSPSMHEPLQNEVFASRHQDQNSVAC 729  

                   iigkCeVlkksdpeslqpeeinidAdkldrarAERKkkgeedvF......
                   i++kC Vl ++++++ + +                  k+++  ++++++ 
   mKIAA0945   730 IEEKCYVLTFAEYCRFCAMA-----------------KRRGEGLpsrkta 762  

                   ..........................fCellYdpekgsFkklp<-*
                     +++ + +++++++ +++++++   +C+++Yd  +g+  k p   
   mKIAA0945   763 lvppsadystpphrtvpedtdpelvfLCRHVYDFRHGRILKNP    805  

//