hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg08976/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0942 ( 276 res) mbg08976 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PH Pleckstrin homology domain. 66.0 4.6e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/1 62 176 .. 1 82 [] 66.0 4.6e-15 Alignments of top-scoring domains: PH: domain 1 of 1, from 62 to 176: score 66.0, E = 4.6e-15 *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk.. v k+G+L +k + + ++++++++k++wk y+vL++ vL++ k++ + mKIAA0942 62 VYKSGFLARKIhadmdgkktprgKrGWKTFYAVLKGTVLYLQKDEyk 108 ........kpkgsipLsgcsvre.p.......cFeivt.dr.tlllqAes ++++ +++++k +++ ++ ++ ++ ++++++F+++t d+++ll+q+ s mKIAA0942 109 pekslsdeDLKNAVSVHHALASKaTdyekkpnVFKLKTaDWrVLLFQTQS 158 eeereeWvealqsaiaka<-* +ee++ W++ ++ ++a mKIAA0942 159 PEEMQGWINKINCVAAVF 176 //