hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00277/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0940  ( 722 res)   mbg00277

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           56.4    3.8e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/2     466   538 ..     1   121 []    33.2  3.5e-05
RRM        2/2     574   647 ..     1   121 []    23.1    0.014

Alignments of top-scoring domains:
RRM: domain 1 of 2, from 466 to 538: score 33.2, E = 3.5e-05
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++fVg+L  ppd++e+++   F              ++fG++v v+ 
   mKIAA0940   466    KVFVGGL--PPDIDEDEITASF--------------RRFGPLV-VDW 495  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +++ +++++ +                  +kG+aF  F +e+++++ +  
   mKIAA0940   496 PHKAESKSYFP------------------PKGYAFLLFQEESSVQALI-D 526  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++l          ++ +   l++    
   mKIAA0940   527 ACLE---------EDGK---LYLC    538  

RRM: domain 2 of 2, from 574 to 647: score 23.1, E = 0.014
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      t+fVg++  p      +L  +              ++ +G v ++ i
   mKIAA0940   574    TIFVGGV--PRPLRAVELAMIM-------------DRLYGGVCYAGI 605  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    +d++                      + +kG + V F+++++  +A  i
   mKIAA0940   606 DTDPE---------------------LKYPKGAGRVAFSNQQSYIAA--I 632  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a       +l  + +    +  +   
   mKIAA0940   633 SARF----VQL--QHND---IDKR    647  

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