hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj05186/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0939  ( 527 res)   mfj05186

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Na_H_Exchanger Sodium/hydrogen exchanger family         250.4    2.4e-71   1
BacA           Bacitracin resistance protein BacA      -171.5       0.48   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
BacA             1/1     178   338 ..     1   277 []  -171.5     0.48
Na_H_Exchanger   1/1      17   419 ..     1   451 []   250.4  2.4e-71

Alignments of top-scoring domains:
BacA: domain 1 of 1, from 178 to 338: score -171.5, E = 0.48
                   *->qaiiLG.ivEGiTEFLPVSSTGHLiLvshlWLGiendkseDDfgksF
                      ++i+L +  EG+T         H+  vs +            +++s+
   mKIAA0939   178    VSIVLTnTAEGLT-------RKHMSDVSGW------------QTFSQ 205  

                   eivIQLGsILAVivyFrkrllrllkglirgvlkehrrgdrrlvlkillAt
                              ++ yF k +++ +                       l+t
   mKIAA0939   206 -----------ALGYFLKMFFGSAA----------------------LGT 222  

                   IPavvlGllfkdfIkallfespwvvVaiaLIvgGillllaeklnkrkepa
                   + ++++ +l+ + I+  l ++++       + +G+ +++a   ++     
   mKIAA0939   223 L-TGLISALVLKHID--L-RKTPS------LEFGMMIIFAYLPYGLA--- 259  

                   trdvedislkdAliiGlaQcLAlifPGvSRSGaTIsgallLGlnReaAae
                       e isl   ++i       l+            +++++         
   mKIAA0939   260 ----EGISLSGIMAI-------LF------------SGIVM--------- 277  

                   FSFlLaIPtmlGAglldllksldgrhelssadlsaslppliiGfit.AFv
                                + +++ ++   +++l+++          ++f+++  v
   mKIAA0939   278 -------------SHYTHHNLSPVTQILMQQT------LRTVAFLCeTCV 308  

                   valfaIkwLLkfikrhkf.ipFaiYRiilGivl<-*
                   +a++    L  f   hkf+i F+i++i+l ++    
   mKIAA0939   309 FAFLG---LSIFSFPHKFeISFVIWCIVLVLFG    338  

Na_H_Exchanger: domain 1 of 1, from 17 to 419: score 250.4, E = 2.4e-71
                   *->avillvlallaglvfllarrlgplPpvvglilaGillGpsglglqim
                      ++i+lv  ll+ +      ++  lP++v+ + +Gil+G         
   mKIAA0939    17    ICIILV-HLLIRY----RLHF--LPESVAVVSLGILMGAVIKV---- 52   

                   mflpvepdlselkvealfpadveldlevlaelGlilLlFlaGleldlrel
                     + +          a ++ + ++ + +++ l+l++++F++G+ l+   +
   mKIAA0939    53 --IEFKKL-------ANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNF 93   

                   rkngksilllallgvllpflliGlllallllglalfl.gllvlgipllea
                   ++n++si+l+a++g++++++++G+++++         +  ++  + ++++
   mKIAA0939    94 FQNIGSITLFAVFGTAISAFVVGGGIYF-------LGqADVISKLNMTDS 136  

                   lffGaalsatspvvvlaiLkergrlntrlgtlilgesvlnDavavvlLav
                   + fG+++sa++pv+++ai+    +++  l  l++ges+lnDav++vl + 
   mKIAA0939   137 FAFGSLISAVDPVATIAIF-NALHVDPVLNMLVFGESILNDAVSIVLTNT 185  

                   llala.segggevgglsdlglllliflvvalgglllglvfpwllrlltrf
                   +++l++ ++++ v+g+ +++ +l  fl  ++g+ +lg + +++++l++++
   mKIAA0939   186 AEGLTrKHMSD-VSGWQTFSQALGYFLKMFFGSAALGTLTGLISALVLKH 234  

                   tdtrgydgdrelevllvlalallaallaellGlsgilGaFlaGlvlsrln
                   +d+r+   ++ le+   +++a+l ++lae + lsgi++ ++ G+v+s  +
   mKIAA0939   235 IDLRK---TPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMS--H 279  

                   yafrneklseksrt.lepfgymlsglfiplFFvlvGlsldlsvllfdqlg
                   y ++n  ls  ++  + ++  ++++l++++ F+++Gls++          
   mKIAA0939   280 YTHHN--LSPVTQIlMQQTLRTVAFLCETCVFAFLGLSIF---------- 317  

                   psgtls.hlsllllvllllvaillgKllgvfllarllnkFrrgklslrea
                       +++h + + +v+  +v++l+g+++ +f+l++lln+Fr++k++ +  
   mKIAA0939   318 ----SFpHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMM 363  

                   livgllllqRGevslalaaiglqlgglidreliytllvivvllttlvqGl
                   +i+++++l RG+++ al     ++     r+li t+++++vl+t+l+ G+
   mKIAA0939   364 FIMWFSGL-RGAIPYALSLHLGLE-PMEKRQLIGTTTIVIVLFTILLLGG 411  

                   tlkpllkk<-*
                   ++ pl++    
   mKIAA0939   412 STMPLIRL    419  

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