hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05063/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0938  ( 1381 res)   mbg05063

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA      ATPases associated with a variety of cellula    37.2    2.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA        1/1    1044  1199 ..     1    92 []    37.2  2.2e-06

Alignments of top-scoring domains:
AAA: domain 1 of 1, from 1044 to 1199: score 37.2, E = 2.2e-06
                   *->pgevvllvGppGsGKTTlaralarllgp.........gviyidge..
                       +++++l Gp+G+GKT la++la +   +++++++++ +  ++ +++
   mKIAA0938  1044    EHHRIILSGPSGTGKTYLANKLAEYVITksgrkktedAIATFNVDhk 1090 

                   ggqrirlalalark............dvlllDEitslld...........
                   + +++++ la + ++ + ++++   + v++lD +++   +++  ++ ++ 
   mKIAA0938  1091 SSKELQQYLANLAEqcsadnngvelpVVIILDNLHHVGSlsdifngflnc 1140 

                   ............................vtviattn.dldpallrr.rfd
                   + ++     +  +++ +++ +++++++ + v++++++++ ++ l r   +
   mKIAA0938  1141 kynkcpyiigtmnqgvssspnlelhhnfRWVLCANHtEPVKGFLGRyLRR 1190 

                   rrivllril<-*
                   + i+++  +   
   mKIAA0938  1191 KLIEMEIER    1199 

//