hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic27001/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0936  ( 503 res)   mic27001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S_TKc    Serine/Threonine protein kinases, catalytic      1.2    1.6e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S_TKc      1/1       1   158 [.     1   231 []     1.2  1.6e-09

Alignments of top-scoring domains:
S_TKc: domain 1 of 1, from 1 to 158: score 1.2, E = 1.6e-09
                   *->YellkklGkGaFGkVylardkktgrlvAiKvikerilrEikiLkkdH
                                                                     
   mKIAA0936     -    ----------------------------------------------- -    

                   PNIVkLydvfeddklylVmEyceGdlGdLfdllkkrgrrglrkvlsEear
                                                                     
   mKIAA0936     - -------------------------------------------------- -    

                   fyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDFGlArql...
                                          KPeN+L+  ++ vK+aDFGlAr+++++
   mKIAA0936     1 -----------------------KPENLLCMGpeLVKIADFGLAREIrsr 27   

                   ...ttfvGTpeYmAPEvl....gYgkpavDiWSlGcilyElltGkpPFp.
                   ++ t +v T++Y+APEvl +++ Y+  ++DiW++Gci++E +t +p+Fp+
   mKIAA0936    28 ppyTDYVSTRWYRAPEVLlrstNYSS-PIDIWAVGCIMAEVYTLRPLFPg 76   

                   ..qldlifkkig......................................
                    +++d+ifk++   ++++++++++++  ++  +  ++   +++ ++  ++
   mKIAA0936    77 asEIDTIFKICQvlgtpkktdwpegyqlssamnflwpqcipnnlktlipn 126  

                   .SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                    S+ea++L++ lL++dP+kR+ta++aL+        P+f   
   mKIAA0936   127 aSSEAIQLLRDLLQWDPKKRPTAsQALR-------YPYF    158  

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