hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic27001/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0936  ( 503 res)   mic27001

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Pkinase     Protein kinase domain                        23.2    1.7e-08   1
Pkinase_Tyr Protein tyrosine kinase                    -168.1        0.2   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pkinase       1/1       1   158 [.     1   287 []    23.2  1.7e-08
Pkinase_Tyr   1/1       1   158 [.     1   272 []  -168.1      0.2

Alignments of top-scoring domains:
Pkinase: domain 1 of 1, from 1 to 158: score 23.2, E = 1.7e-08
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                                                                     
   mKIAA0936     -    ----------------------------------------------- -    

                   rsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdylse
                                                                     
   mKIAA0936     - -------------------------------------------------- -    

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldengv
                                                         KPeN+L+     
   mKIAA0936     1 --------------------------------------KPENLLCMGPEL 12   

                   vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD
                   v    KiaDFGlA+   ++s +++t++v T+wY+APEvll ++ y++++D
   mKIAA0936    13 V----KIADFGLARE--IrSRPpYTDYVSTRWYRAPEVLLRSTNYSSPID 56   

                   vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds
                   +W++G+i++e++t +p+F+g+   s++d +++i+++lg+p + d+pe + 
   mKIAA0936    57 IWAVGCIMAEVYTLRPLFPGA---SeIDTIFKICQVLGTPKKTDWPEGYQ 103  

                   isrse.fr.........r.l.pnlseeakdLikkcLnkDPskRltaeeil
                    s  ++f  ++  +++ ++l pn+s+ea++L++++L++DP+kR+ta ++l
   mKIAA0936   104 LSSAMnFLwpqcipnnlKtLiPNASSEAIQLLRDLLQWDPKKRPTASQAL 153  

                   qHPwf<-*
                     P+f   
   mKIAA0936   154 RYPYF    158  

Pkinase_Tyr: domain 1 of 1, from 1 to 158: score -168.1, E = 0.2
                   *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseeie
                                          k               +e         
   mKIAA0936     1    --------------------K---------------PE--------- 3    

                   redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL
                               +l            c+   +P                 
   mKIAA0936     4 ------------NL-----------LCM---GP----------------- 10   

                   ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs
                                                                     
   mKIAA0936     - -------------------------------------------------- -    

                   enlvVKIsDFGLaRdiynddyYvrkkgggklPv......kWm.APEslky
                       VKI+DFGLaR i       r++     P ++  +++W++APE+l  
   mKIAA0936    11 --ELVKIADFGLAREI-------RSRP----PYtdyvstRWYrAPEVLLR 47   

                   gk.FtskSDVWSFGVlLWEiftlGeqP.F.....................
                   + +++s  D+W+ G+ + E++t    P F++ ++ ++  +  +  +++++
   mKIAA0936    48 STnYSSPIDIWAVGCIMAEVYT--LRPlFpgaseidtifkicqvlgtpkk 95   

                   ................YpgmsneevlellyedGyRLprPenCPdelYdlM
                   ++ +++ + ++  +  +p + +  ++ l+          +n++ e  +l 
   mKIAA0936    96 tdwpegyqlssamnflWPQCIPNNLKTLI----------PNASSEAIQLL 135  

                   lqCWaedPedRPtFsel..verL<-*
                   +   ++dP++RPt s+  ++  +   
   mKIAA0936   136 RDLLQWDPKKRPTASQAlrYPYF    158  

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