hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01962/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0935  ( 256 res)   mpj01962

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Glyco_hydro_38C Glycosyl hydrolases family 38 C-termi   -36.0    3.5e-05   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Glyco_hydro_38C   1/1       1   251 [.     1   634 []   -36.0  3.5e-05

Alignments of top-scoring domains:
Glyco_hydro_38C: domain 1 of 1, from 1 to 251: score -36.0, E = 3.5e-05
                   *->epvvvfNpLawtrnevVripvsspnvsvdesgeiteailaeedsgkp
                                                                     
   mKIAA0935     -    ----------------------------------------------- -    

                   vesQivpvpsiveelrytaylgrsrtsttkyellFllaevPplGyatyki
                                                                     
   mKIAA0935     - -------------------------------------------------- -    

                   kkvakteevnelpsakaeislsnelslsqpiekvssfvkkddevilserr
                                                                     
   mKIAA0935     - -------------------------------------------------- -    

                   leNgylkvefdpdtGlltsiyDkengrevlaegagngvgnqfqlYedkPl
                                                                     
   mKIAA0935     - -------------------------------------------------- -    

                   yWaDAWDidgdyeekplelqedsgaylfrpngplrasirvkrkfaveekv
                                                                     
   mKIAA0935     - -------------------------------------------------- -    

                   plvvvdGelvqevhqsesswisqvirlyagstrlynqlldpriefeteVd
                                                                     
   mKIAA0935     - -------------------------------------------------- -    

                   pwperekigkeLkvrFptdirsdkafYedqfGrverkRrrderlpthlnv
                   +                                                 
   mKIAA0935     1 R------------------------------------------------- 1    

                   netswegayyEvpahrfiddsekRkpgYGvslLndskyGgssSirelaqd
                          +yy++++ +fi+d+++R     ++lL ++++G+ss    ++ +
   mKIAA0935     2 -------NYYPMVQSAFIEDDKSR-----LVLLAERPHGVSS----QG-N 34   

                   GqleLsLlRlsPtyPdpsaDAldGrhlfegLnenkctntyaLyphggswv
                   Gq+e++L+R      +++    + + l ++L+        + ++h+  w+
   mKIAA0935    35 GQVEVMLHR------RLWNN--LAWDLKYNLTL-----NDTSIVHPVLWL 71   

                   sagvvkeayasypSllrrlasqeLnaPllvffteegdesaigsgaallss
                    +g+ +  +a      +++++ +L++ ++v+++e  de+ +++g++ +++
   mKIAA0935    72 MLGPKSTMTAL-----HPRSGVALQHGPVVLLKELADEETPVHGPHNPWP 116  

                   vsgleltpelplsvhlltlildaiKlAeDg............eeleasdg
                   v+       lp+++hl+ l ++ +++++ + ++ ++ +++++e+++a+ +
   mKIAA0935   117 VT-------LPPNLHLQILSVPGWTYSRSHaqhlrnlqrghpEKPQANLQ 159  

                   lvLrryeslgergeatlrtlsgpvasvtvnltnllErllavvslketsLt
                    vL+r+ +l+e ge+   +ls+p   +tv+l+ +l +l++vv+++e+sLt
   mKIAA0935   160 RVLLRLRHLYEAGEDP--VLSRP---ATVDLKVVLRGLGSVVAVEERSLT 204  

                   Gnqel.kl.rlkwktkhPavGegkneek.s.rg.evqdeevevtLkPfEI
                   G++++++l+r++w+tk       +++ k+++++++ ++++ ++t++P EI
   mKIAA0935   205 GTWDVqMLqRWHWSTK-------TDHLKgHpTSpPRPPGGSIITVYPKEI 247  

                   rTfr<-*
                   rTf+   
   mKIAA0935   248 RTFF    251  

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