hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj03019/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0934  ( 1179 res)   mfj03019

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
AMP-binding AMP-binding enzyme                          162.5    7.3e-45   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
AMP-binding   1/1     626  1098 ..     1   377 []   162.5  7.3e-45

Alignments of top-scoring domains:
AMP-binding: domain 1 of 1, from 626 to 1098: score 162.5, E = 7.3e-45
                   *->TYrELderanrlAaaLr.alGvgpGdrVaillpnspelvvailAvlk
                      T  +L+ ra+++A  L ++  ++ Gd+Va+  p +++l++a++++l 
   mKIAA0934   626    TCVQLHKRAEKIAVMLMeRGHLQDGDHVALVYPPGIDLIAAFYGCLY 672  

                   aGaayvPldpsypa......erlayiledsgakvlltddalla.l.....
                   aG+++ ++ p +p++  ++   +  i+e s++++l t+      l + ++
   mKIAA0934   673 AGCVPITVRPPHPQniattlPTVKMIVEVSRSACLMTTQLICKlLrsrea 722  

                   .....................s.e.p.ppvdpddlAyiiYTSGTTGkPKG
                   ++++++ + +   ++++ +++ +++   p++pd lAy+ ++  TTG+  G
   mKIAA0934   723 aaavdvrtwplildtddlpkkRpAqIyKPSNPDTLAYLDFSVSTTGMLAG 772  

                   VmltHrnlvnlvaala.rf.l.pddaervllllppllhfdgsvweifgpL
                   V ++H++  ++++++  +++l p    r  +   ++++  g+v++ ++++
   mKIAA0934   773 VKMSHAATSAFCRSIKlQCeLyPS---REVAICLDPYCGLGFVLWCLCSV 819  

                   laGatlvlvpkfdryrdpealldliekykvTvlflvPtllrlllkape..
                   ++G++ +l+p+ ++  +p+++l ++ +ykv  +f+  ++++l+ k   ++
   mKIAA0934   820 YSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGsq 869  

                   ........edlssLrlvlsgGealpp.elarrlrerfgs...........
                   +++ + ++ dls++r++++++e  p+ +l + + ++f++ + +++  +++
   mKIAA0934   870 teslkargLDLSRVRTCVVVAEERPRiALTQSFSKLFKDlglhpravsts 919  

                   ......ggvrlvngYGpTEttvvatanppg.p..............pgsi
                    + + + ++ l  + Gp  ttv + +  +++++ +  +++++++ +    
   mKIAA0934   920 fgcrvnLAICLQGTSGPDPTTVYVDMRALRhDrvrlvergsphslpLMES 969  

                   GrPlpgvevyvlDeeg.qpvppGvvGELyirGwpgvarGYlnrPelTaer
                   G+ lpgv++ + ++e++ p+++   GE+++++ ++ a GY+   +   e+
   mKIAA0934   970 GKILPGVRIIIANPETkGPLGDSHLGEIWVHS-AHNASGYFTIYG--DES 1016 

                   Fvadgwgp.......GeRmYrTGDlgrwdpD..........GyleilGRk
                     +d ++++ + +++++ + rTG lg ++  + ++ +++++  l+++G +
   mKIAA0934  1017 LQSDHFNSrlsfgdtQTIWARTGYLGFLRRTeltdangerhDALYVVGAL 1066 

                   DdqvKirGerIepgEiEavLl.ahPgVaeAaV<-*
                   D+   +rG r  p +iE+ + +ah  V e+aV   
   mKIAA0934  1067 DEAMELRGMRYHPIDIETSVIrAHKSVTECAV    1098 

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