hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06003/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0928  ( 1475 res)   mpm06003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RIBOc    Ribonuclease III family                        310.8    9.4e-89   2
HELICc   helicase superfamily c-terminal domain          48.9    6.8e-10   1
DSRM     Double-stranded RNA binding motif               44.8    1.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HELICc     1/1      18   115 ..     1    86 []    48.9  6.8e-10
RIBOc      1/2     854  1151 ..     1   140 []   132.6  4.4e-35
RIBOc      2/2    1234  1400 ..     1   140 []   178.2  8.1e-49
DSRM       1/1    1403  1466 ..     1    68 []    44.8  1.2e-08

Alignments of top-scoring domains:
HELICc: domain 1 of 1, from 18 to 115: score 48.9, E = 6.8e-10
                   *->delaelLkellkdpgikvarlHG..................glsqee
                      + ++e  k+       + a++ ++  ++++ +++++++++ +   ++
   mKIAA0928    18    RLIKEAGKQD-----PELAYISSnfitghgigknqprskqmEAEFRK 59   

                   ReeilekFrkgkikvLvaTdvaerGlDipgvdlVInydlpwspasyiQRi
                   +ee+l+kFr+ + + L+aT+v e+G+Dip ++lV+ +dlp  + sy+Q  
   mKIAA0928    60 QEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSK 109  

                   GRaGRaG<-*
                   GR +Ra    
   mKIAA0928   110 GR-ARAP    115  

RIBOc: domain 1 of 2, from 854 to 1151: score 132.6, E = 4.4e-35
                   *->eLLlqAlThaSyanehegsehneRLEFLGDaVLelviteyLykkfPd
                       L+lqAlT ++++++    ++ eRLE LGD++L+++it yL++++Pd
   mKIAA0928   854    GLILQALTLSNASDG----FNLERLEMLGDSFLKHAITTYLFCTYPD 896  

                   lshEGdLsklRsalVsnetLarlakklglg....................
                   ++ EG Ls +Rs+ Vsn++L+rl+kk gl+++   +  +++ +  +++  
   mKIAA0928   897 AH-EGRLSYMRSKKVSNCNLYRLGKKKGLPsrmvvsifdppvnwlppgyv 945  

                   ..................................................
                    +++++++++ ++++ +++    +++ ++  +++++ + + ++++ ++++
   mKIAA0928   946 vnqdksnsekwekdemtkdcllangklgeaceeeedltwrapkeeaeded 995  

                   ..................................................
                   +  + ++++ +  ++   + +   ++ + ++ + +++  + + +++ + +
   mKIAA0928   996 dfleydqehiqfidsmlmglgafvrkislspfsasdsayewkmpkkaslg 1045 

                   ..................................................
                   + +  ++ ++ + ++ +     ++++  ++++   +  ++++++ + +++
   mKIAA0928  1046 smpfasgledfdysswdamcyldpskaveeddfvvgfwnpseencgvdtg 1095 

                   ...eflrlgrgeeksggrepgdidkpkilADvfEAliGAiYLDsGleaae
                   +++  + l+++ +++++           +AD++EAl+G+++  +G  aa+
   mKIAA0928  1096 kqsISYDLHTEQCIADKS----------IADCVEALLGCYLTSCGERAAQ 1135 

                   efirkllgprleeltl<-*
                    f++ l ++ l+ +++   
   mKIAA0928  1136 LFLCSLGLKVLPVIKR    1151 

RIBOc: domain 2 of 2, from 1234 to 1400: score 178.2, E = 8.1e-49
                   *->eLLlqAlThaSyanehegsehneRLEFLGDaVLelviteyLykkfPd
                      ++LlqA+ThaSy +++ ++ +++RLEFLGDa+L+++it++Ly+++++
   mKIAA0928  1234    AYLLQAFTHASYHYNT-ITDCYQRLEFLGDAILDYLITKHLYEDPRQ 1279 

                   lshEGdLsklRsalVsnetLarlakklglg....................
                   +s +G+L++lRsalV+n  +a+la+k++ ++  +  +++  +  ++  + 
   mKIAA0928  1280 HS-PGVLTDLRSALVNNTIFASLAVKYDYHkyfkavspelfhviddfvkf 1328 

                   ............eflrlgrgeeksggrepgdidkpkilADvfEAliGAiY
                   + ++++ ++ ++e  r   +eek++     di+ pk+++D+fE+l GAiY
   mKIAA0928  1329 qleknemqgmdsELRRSEEDEEKEE-----DIEVPKAMGDIFESLAGAIY 1373 

                   LDsG..leaaeefirkllgprleeltl<-*
                   +DsG +le+++++ +++++p +e+++    
   mKIAA0928  1374 MDSGmsLEVVWQVYYPMMQPLIEKFSA    1400 

DSRM: domain 1 of 1, from 1403 to 1466: score 44.8, E = 1.2e-08
                   *->pkslLqElaqkrglplpeYelvkeeGpdHaprFtvtvkvggkitgeG
                      p s + El++++   + ++   +    d + r tv+v+ +g  +++G
   mKIAA0928  1403    PRSPVRELLEMEPE-TAKFSPAE-RTYDGKVRVTVEVVGKG--KFKG 1445 

                   eGsSKKeAkqaAAeaALrkLk<-*
                   +G+S ++Ak+aAA+ ALr+Lk   
   mKIAA0928  1446 VGRSYRIAKSAAARRALRSLK    1466 

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