hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08305/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0927  ( 713 res)   mbg08305

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CCP      Domain abundant in complement control protei   214.1    1.3e-59   4
CUB      Domain first found in C1r, C1s, uEGF, and bo   198.7    5.4e-55   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CUB        1/3      35   143 ..     1   144 []    41.9  8.5e-08
CCP        1/4     147   202 ..     1    79 []    53.8  2.2e-11
CUB        2/3     206   316 ..     1   144 []    65.1  8.9e-15
CCP        2/4     321   378 ..     1    79 []    50.0  3.1e-10
CUB        3/3     382   493 ..     1   144 []    91.2  1.2e-22
CCP        3/4     499   554 ..     1    79 []    64.8  1.1e-14
CCP        4/4     563   620 ..     1    79 []    64.1  1.8e-14

Alignments of top-scoring domains:
CUB: domain 1 of 3, from 35 to 143: score 41.9, E = 8.5e-08
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CG ++ +++      G+i S  +P  p    Y + leC++++++  G
   mKIAA0927    35    CGVSFSDPE------GYIDSSDFPPQP----YSSFLECTYNVTVYTG 71   

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiy..DGpsktsspl
                   y +eL+  +    +l                 + + i++ DGp+    ++
   mKIAA0927    72 YGVELQVKS---VNLSEG--------------ELLSIRgvDGPT---LTV 101  

                   lGntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa
                   l+          + ++i+S +N++ v F++   +         F+++Y+a
   mKIAA0927   102 LA----NQTLLVeGqVIRSPTNTISVYFRTFQDDG-----LGTFQLHYQA 142  

                   v<-*
                   +   
   mKIAA0927   143 F    143  

CCP: domain 1 of 4, from 147 to 202: score 53.8, E = 2.2e-11
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      Cp P     ++ G+vt+ +           + G +++++C+ GY+l+
   mKIAA0927   147    CPfPR---RPDAGEVTVMD----------LHSGGVAHFHCHLGYELQ 180  

                   GgsqpekSrestsstitCtsn....WspppsgplPtC<-*
                   G            +t+tC++ ++++Ws+++    P C   
   mKIAA0927   181 G-----------AKTLTCINAskphWSSQE----PVC    202  

CUB: domain 2 of 3, from 206 to 316: score 65.1, E = 8.9e-15
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CGg +  ++      G++ SP++P+       + ++ CvWtI+ap+G
   mKIAA0927   206    CGGAVHNATI-----GRVLSPSFPGT-----ANGSQLCVWTIEAPEG 242  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                   ++++L+ +      l  ++             D   +y G++ ++s ll 
   mKIAA0927   243 QKLHLHLER-----LLLHEK------------DRMIVYSGRT-NTSALLY 274  

                   ntearfCGse....p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYs
                           +e+ + ++++s  ++s++++F sD +       ++ F++r++
   mKIAA0927   275 ----DSLRTEsvpfEgLLSE-GSSIRIEFTSDQGQA-----ASAFNIRFE 314  

                   av<-*
                   a+   
   mKIAA0927   315 AF    316  

CCP: domain 2 of 4, from 321 to 378: score 50.0, E = 3.1e-10
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      C +P     i+nG +t+s+        +ty++G+ v+++C+pG++l 
   mKIAA0927   321    CYePY----IQNGNFTTSD--------PTYNIGTIVEFTCDPGHSLE 355  

                   GgsqpekSrestsstitCtsn.....WspppsgplPtC<-*
                    g          +++i+C  n +++ W++++    P C   
   mKIAA0927   356 QG----------PAVIECV-NvrdpyWNDTE----PLC    378  

CUB: domain 3 of 3, from 382 to 493: score 91.2, E = 1.2e-22
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CGg+l a        G++ SPn+P++     Y  + +CvW I++ + 
   mKIAA0927   382    CGGELSAVA------GVVLSPNWPEP-----YAEGEDCVWKIHVGEE 417  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                   +ri L+++    ++l +               D ++iyDG++ +   +lG
   mKIAA0927   418 KRIFLDIQF---LNLSN--------------SDILTIYDGDE-VVPHVLG 449  

                   ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav<
                       ++ G+++p+ ++Ss+  +t++F+sD+ +   g +++GF ++Y  v 
   mKIAA0927   450 ----QYFGHSsPqKLYSSTPDLTIQFHSDPAGLIFG-KGQGFIMNYIEV  493  

                   -*
                     
   mKIAA0927     -    -    

CCP: domain 3 of 4, from 499 to 554: score 64.8, E = 1.1e-14
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      C+++p   +i+nG  t+s+        ++   G ++ty+C+pGY +v
   mKIAA0927   499    CSdLP---EIQNGWKTTSH--------TELVRGARITYQCDPGYDIV 534  

                   GgsqpekSrestsstitCtsn..WspppsgplPtC<-*
                   G           s t+tC+ + +Ws+ p    P+C   
   mKIAA0927   535 G-----------SDTLTCQWDlsWSSDP----PFC    554  

CCP: domain 4 of 4, from 563 to 620: score 64.1, E = 1.8e-14
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      C++P+    +enG+ + ++        + y  G+++t+ C +G++l+
   mKIAA0927   563    CDnPG---LPENGYQILYK--------RLYLPGESLTFMCYEGFELM 598  

                   GgsqpekSrestsstitCtsn....WspppsgplPtC<-*
                   G           + ti+C+ +++++Ws+p     P+C   
   mKIAA0927   599 G-----------EVTIRCILGqpshWSGPL----PIC    620  

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