hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08305/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0927  ( 713 res)   mbg08305

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sushi    Sushi domain (SCR repeat)                      171.2    1.8e-47   4
CUB      CUB domain                                     115.6    9.7e-31   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CUB        1/3      35   140 ..     1   116 []     1.5  0.00041
Sushi      1/4     147   202 ..     1    64 []    37.7  2.6e-07
CUB        2/3     206   313 ..     1   116 []    45.4  1.2e-09
Sushi      2/4     321   378 ..     1    64 []    33.3  5.7e-06
CUB        3/3     382   490 ..     1   116 []    68.5  1.4e-16
Sushi      3/4     499   554 ..     1    64 []    61.4    2e-14
Sushi      4/4     563   620 ..     1    64 []    57.3  3.4e-13

Alignments of top-scoring domains:
CUB: domain 1 of 3, from 35 to 140: score 1.5, E = 0.00041
                   *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF
                      CG    + ++ G+i+S ++P ++Y+  +eC++ +++  gy  VeL+ 
   mKIAA0927    35    CGVS--FSDPEGYIDSSDFPPQPYSSFLECTYNVTVYTGYG-VELQV 78   

                   qdFdlEdhdgaCryDyvEir..DGdpssspllGrfCGgsgpPedirStsn
                    + +l         + + ir+ DG+  +  +l+      +   +irS +n
   mKIAA0927    79 KSVNLS------EGELLSIRgvDGPTLT--VLANQT-LLVEGQVIRSPTN 119  

                   rmlikFvsDasvqkrGFkAty<-*
                   +  + F +      + F+++y   
   mKIAA0927   120 TISVYFRTFQDDGLGTFQLHY    140  

Sushi: domain 1 of 4, from 147 to 202: score 37.7, E = 2.6e-07
                   *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte
                      Cp+p+ ++ G+v++     +   G ++++ C+ GY+l+G +++tC+ 
   mKIAA0927   147    CPFPRRPDAGEVTVM--DLHS--GGVAHFHCHLGYELQGAKTLTCI- 188  

                   dg.g.GgWsppllgelPkC<-*
                    + ++ +Ws+++    P+C   
   mKIAA0927   189 -NaSkPHWSSQE----PVC    202  

CUB: domain 2 of 3, from 206 to 313: score 45.4, E = 1.2e-09
                   *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF
                      CGg +    + G+  SP +P    ++++ CvW+I+ap+g++  +L+ 
   mKIAA0927   206    CGGAV-HNATIGRVLSPSFPG-TANGSQLCVWTIEAPEGQK-LHLHL 249  

                   qdFdlEdhdgaCryDyvEirDGdpss.spllG..rfCGgsgpPedirSts
                   + + l        +D   ++ G+ ++++ l+ + r    s+p e + S +
   mKIAA0927   250 ERLLLH------EKDRMIVYSGRTNTsALLYDslRTE--SVPFEGLLSEG 291  

                   nrmlikFvsDasvqkrGFkAty<-*
                   ++ +i+F+sD + +++ F++++   
   mKIAA0927   292 SSIRIEFTSDQGQAASAFNIRF    313  

Sushi: domain 2 of 4, from 321 to 378: score 33.3, E = 5.7e-06
                   *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvG.sssitCt
                      C   P i+NG++++s +ty    G+ v++tC++G +l+ ++++i C+
   mKIAA0927   321    CY-EPYIQNGNFTTSDPTYNI--GTIVEFTCDPGHSLEQgPAVIECV 364  

                   edggGg...WsppllgelPkC<-*
                    +   +++ W+ ++    P C   
   mKIAA0927   365 -N--VRdpyWNDTE----PLC    378  

CUB: domain 3 of 3, from 382 to 490: score 68.5, E = 1.4e-16
                   *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF
                      CGg+  l    G+  SPn+P+ +Y    +CvW I + +++r ++L +
   mKIAA0927   382    CGGE--LSAVAGVVLSPNWPE-PYAEGEDCVWKIHVGEEKR-IFLDI 424  

                   qdFdlEdhdgaCryDyvEirDGdpssspllGrfCGgsgpPedirStsnrm
                   q ++l       + D + i+DGd+ +  +lG + G +  P  ++S++  +
   mKIAA0927   425 QFLNLS------NSDILTIYDGDEVVPHVLGQYFG-HSSPQKLYSSTPDL 467  

                   likFvsDas....vqkrGFkAty<-*
                   +i F+sD  +     + GF  +y   
   mKIAA0927   468 TIQFHSDPAglifGKGQGFIMNY    490  

Sushi: domain 3 of 4, from 499 to 554: score 61.4, E = 2e-14
                   *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte
                      C+++P+i+NG  ++s t+     G  +ty+C++GY +vGs+++tC+ 
   mKIAA0927   499    CSDLPEIQNGWKTTSHTELVR--GARITYQCDPGYDIVGSDTLTCQW 543  

                   dggGgWsppllgelPkC<-*
                   d   +Ws+ +    P C   
   mKIAA0927   544 D--LSWSSDP----PFC    554  

Sushi: domain 4 of 4, from 563 to 620: score 57.3, E = 3.4e-13
                   *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte
                      C++p+ +eNG+ + +k+ y    G+++t+ C eG++l G+ +i+C+ 
   mKIAA0927   563    CDNPGLPENGYQILYKRLYLP--GESLTFMCYEGFELMGEVTIRCIL 607  

                   dgg.GgWsppllgelPkC<-*
                   + ++++Ws+pl    P+C   
   mKIAA0927   608 G-QpSHWSGPL----PIC    620  

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