hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp20088/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0924  ( 617 res)   mbp20088

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    140.0    2.4e-37   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/9     253   276 ..     1    23 []    27.5   0.0018
ZnF_C2H2   2/9     280   300 ..     1    23 []     4.8       91
ZnF_C2H2   3/9     307   330 ..     1    23 []    19.8     0.38
ZnF_C2H2   4/9     337   359 ..     1    23 []    22.6    0.056
ZnF_C2H2   5/9     365   387 ..     1    23 []    24.4    0.016
ZnF_C2H2   6/9     393   415 ..     1    23 []    25.6   0.0068
ZnF_C2H2   7/9     421   443 ..     1    23 []    26.3   0.0042
ZnF_C2H2   8/9     449   471 ..     1    23 []    33.6  2.6e-05
ZnF_C2H2   9/9     477   497 ..     1    23 []     4.9       89

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 9, from 253 to 276: score 27.5, E = 0.0018
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C+++f+++  L++Hm  +H   
   mKIAA0924   253    LTCEK-CPRVFNTRwYLEKHMNvTH    276  

ZnF_C2H2: domain 2 of 9, from 280 to 300: score 4.8, E = 91
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ Cgk+f  +++L  H++     
   mKIAA0924   280    QICDK-CGKKFVLEsELSLHQQ--    300  

ZnF_C2H2: domain 3 of 9, from 307 to 330: score 19.8, E = 0.38
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C   C+ksf+   +L +H++ vH   
   mKIAA0924   307    IQCVS-CNKSFKKLwSLHEHIKiVH    330  

ZnF_C2H2: domain 4 of 9, from 337 to 359: score 22.6, E = 0.056
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+i C k+f +  + ++Hm  H   
   mKIAA0924   337    FACEI-CEKKFYTMaHVRKHMVAH    359  

ZnF_C2H2: domain 5 of 9, from 365 to 387: score 24.4, E = 0.016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+  Cgksf++  +Lk H  +H   
   mKIAA0924   365    FTCET-CGKSFKRSmSLKVHSLQH    387  

ZnF_C2H2: domain 6 of 9, from 393 to 415: score 25.6, E = 0.0068
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+  C+++f  k +L+ Hm +H   
   mKIAA0924   393    FRCEN-CDERFQYKyQLRSHMSIH    415  

ZnF_C2H2: domain 7 of 9, from 421 to 443: score 26.3, E = 0.0042
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk f+ k+ + +Hm++H   
   mKIAA0924   421    FMCQW-CGKDFNMKqYFDEHMKTH    443  

ZnF_C2H2: domain 8 of 9, from 449 to 471: score 33.6, E = 2.6e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+i Cgksf+s++++krH r+H   
   mKIAA0924   449    FICEI-CGKSFTSRpNMKRHRRTH    471  

ZnF_C2H2: domain 9 of 9, from 477 to 497: score 4.9, E = 89
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cg++f+  + Lk H       
   mKIAA0924   477    YPCDV-CGQRFRFSnMLKAHKE--    497  

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