hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp20088/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0924  ( 617 res)   mbp20088

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         187.5    2.1e-52   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/9     253   276 ..     1    24 []    27.1   0.0004
zf-C2H2    2/9     280   303 ..     1    24 []    21.4    0.021
zf-C2H2    3/9     307   330 ..     1    24 []    22.6   0.0091
zf-C2H2    4/9     337   359 ..     1    24 []    25.1   0.0017
zf-C2H2    5/9     365   387 ..     1    24 []    29.0  0.00011
zf-C2H2    6/9     393   415 ..     1    24 []    27.5  0.00031
zf-C2H2    7/9     421   443 ..     1    24 []    25.8    0.001
zf-C2H2    8/9     449   471 ..     1    24 []    36.5    6e-07
zf-C2H2    9/9     477   499 ..     1    24 []    24.4   0.0027

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 9, from 253 to 276: score 27.1, E = 0.0004
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C+ +C ++F+++  L++H++++H   
   mKIAA0924   253    LTCE-KCPRVFNTRWYLEKHMNVtH    276  

zf-C2H2: domain 2 of 9, from 280 to 303: score 21.4, E = 0.021
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                        C+ +Cgk+F   s+L  H++t++   
   mKIAA0924   280    QICD-KCGKKFVLESELSLHQQTdC    303  

zf-C2H2: domain 3 of 9, from 307 to 330: score 22.6, E = 0.0091
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C   C+ksF+   +L+ H+++ H   
   mKIAA0924   307    IQCV-SCNKSFKKLWSLHEHIKIvH    330  

zf-C2H2: domain 4 of 9, from 337 to 359: score 25.1, E = 0.0017
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +C k+F + ++ ++H+  H   
   mKIAA0924   337    FACE-ICEKKFYTMAHVRKHMVAH    359  

zf-C2H2: domain 5 of 9, from 365 to 387: score 29.0, E = 0.00011
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  CgksF+r+ +Lk H   H   
   mKIAA0924   365    FTCE-TCGKSFKRSMSLKVHSLQH    387  

zf-C2H2: domain 6 of 9, from 393 to 415: score 27.5, E = 0.00031
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  C+++F  k++L++H+ +H   
   mKIAA0924   393    FRCE-NCDERFQYKYQLRSHMSIH    415  

zf-C2H2: domain 7 of 9, from 421 to 443: score 25.8, E = 0.001
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  Cgk F+ k  +  H++tH   
   mKIAA0924   421    FMCQ-WCGKDFNMKQYFDEHMKTH    443  

zf-C2H2: domain 8 of 9, from 449 to 471: score 36.5, E = 6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +CgksF+++ n+krH+rtH   
   mKIAA0924   449    FICE-ICGKSFTSRPNMKRHRRTH    471  

zf-C2H2: domain 9 of 9, from 477 to 499: score 24.4, E = 0.0027
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cg++F+ +  Lk+H+ ++   
   mKIAA0924   477    YPCD-VCGQRFRFSNMLKAHKEKC    499  

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