hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg05450/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0921 ( 1555 res) mbg05450 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LamG Laminin G domain 668.2 2.5e-196 6 EGF Epidermal growth factor-like domain. 31.9 8.7e-05 3 4.1m putative band 4.1 homologues' binding motif 29.0 0.00064 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LamG 1/6 94 232 .. 1 137 [] 126.5 3e-33 EGF 1/3 250 287 .. 1 32 [] 11.8 23 LamG 2/6 355 497 .. 1 137 [] 114.2 1.4e-29 LamG 3/6 551 704 .. 1 137 [] 149.9 2.7e-40 EGF 2/3 731 765 .. 1 32 [] 24.8 0.012 LamG 4/6 790 928 .. 1 137 [] 88.4 8.7e-22 LamG 5/6 976 1112 .. 1 137 [] 153.7 1.9e-41 EGF 3/3 1137 1171 .. 1 32 [] 11.3 26 LamG 6/6 1199 1355 .. 1 137 [] 56.7 3e-12 4.1m 1/1 1500 1518 .. 1 19 [] 29.0 0.00064 Alignments of top-scoring domains: LamG: domain 1 of 6, from 94 to 232: score 126.5, E = 3e-33 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl +++++sfs+rT ++++lLly+++++++dfl+l Lv dGrl+l mKIAA0921 94 StGELSFSLRTNATRALLLYLDdggDCDFLELLLV------DGRLRL 134 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn r+ l + ++pa+l+ d tp++D +WH V ++r+ r+ L VDg++ mKIAA0921 135 RFTLSC---AEPATLQLD----TPVADDRWHMVLLTRDARRTALAVDGEA 177 pvsges...t.LdldkeesgplylGGlPe...........lpvspgFrGC ++ ++ ++++++++ ++l++GG+P++ + + + +++++ p+FrG mKIAA0921 178 RAAEVRskrReMQVA----SDLFVGGIPPdvrlsaltlstVKYEPPFRGL 223 irnlrvngk<-* + nl++ ++ mKIAA0921 224 LANLKLGER 232 EGF: domain 1 of 3, from 250 to 287: score 11.8, E = 23 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* Ca+ ++pC nG G C+ ++ C+C G+ g+ C mKIAA0921 250 LCAparnPCANG-----GLCTvlapgEVGCdCSHTGFGGkFCS 287 LamG: domain 2 of 6, from 355 to 497: score 114.2, E = 1.4e-29 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry ++ +i++ FrT + nGl+l++g+ d++ l+L+ G + l++ mKIAA0921 355 StDEITLAFRTLQRNGLMLHTGkSADYVNLSLK------SGAVWLVI 395 dlGssttggparltsdsdrptplnDGqWHrVsvern........grsvtL +lGs g+++ ++++ + ++nD+ WH+V+v+rn +++ + + vt+ mKIAA0921 396 NLGS----GAFEALVEPV-NGKFNDNAWHDVRVTRNlrqhagigHAMVTI 440 sVDggnpvsges....t.LdldkeesgplylGGlPe......lpvspgFr sVDg ++++g+++++ t L +d + +y+GG P++ + +++pvs++F mKIAA0921 441 SVDGILTTTGYTqedyTmLGSD----DFFYIGGSPNtadlpgSPVSNNFM 486 GCirnlrvngk<-* GC++++++ ++ mKIAA0921 487 GCLKDVVYKNN 497 LamG: domain 3 of 6, from 551 to 704: score 149.9, E = 2.7e-40 *->t.lsisfsFrTtspnGlLlyag...............ggdflaleLv +++sis++FrTt+pnGlLl++ +++ + + ++++++++ d++a+eL mKIAA0921 551 RtGSISLDFRTTEPNGLLLFSQgrragagvgshsstqRADYFAMELL 597 lEDsdgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsvern dG+l+l +d+Gs g ++l+++s +++nDG+W +V ++r+ mKIAA0921 598 ------DGYLYLLLDMGS----GGIKLRASS---RKVNDGEWCHVDFQRD 634 grsvtLsVDggnpvsges....t.LdldkeesgplylGGlPe........ gr++++sV+ ++++ ++++++ Ldl+ + lylGGlPe+++ + + mKIAA0921 635 GRKGSISVN-SRSTPFLAtgesEvLDLE----SELYLGGLPEggrvdlpl 679 ......lpvspgFrGCirnlrvngk<-* +++ + + ++g++GC+r+l+++g+ mKIAA0921 680 ppevwtAALRAGYVGCVRDLFIDGR 704 EGF: domain 2 of 3, from 731 to 765: score 24.8, E = 0.012 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* Ca+ pC nG G+C+++ + + C+C g G+ g+ Ce mKIAA0921 731 QCAsaPCRNG-----GICRegwnRFVCdCIGTGFLGrVCE 765 LamG: domain 4 of 6, from 790 to 928: score 88.4, E = 8.7e-22 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl +++s++F + + Gl++ +++++ d l leL +G+ +l mKIAA0921 790 EaEDVSLRFMSQRAYGLMMATTsreSADTLRLELD------GGQMRL 830 rydlGsst.....tggparltsdsdrptplnDGqWHrVsverngrsvtLs +++l++ + + +++gp +l ++ +lnD++WH+V+v+r g+s++Ls mKIAA0921 831 TVNLDCLRvgcapSKGPETLFAG----HKLNDNEWHTVRVVRRGKSLQLS 876 VDggnpvsges....t.LdldkeesgplylGGlPe....lpvspgFrGCi VD +v+g + +t+L+++ ++ G + e++ ++v ++F G + mKIAA0921 877 VD-NVTVEGQMagahTrLEFH-----NIETGIMTErrfiSVVPSNFIGHL 920 rnlrvngk<-* ++l++ng+ mKIAA0921 921 SGLVFNGQ 928 LamG: domain 5 of 6, from 976 to 1112: score 153.7, E = 1.9e-41 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr ++++ f+F+Tt+p+GlLl+++++g+df+ +eLv G+++++ mKIAA0921 976 AsMHLFFQFKTTAPDGLLLFNSgnGNDFIVIELV------KGYIHYV 1016 ydlGssttggparltsdsdrptplnDGqWHrVsvern.grsvtLsVDggn +dlG+ gp+ + +s ++p+nD+qWH V+v+r++g+ tL++D ++ mKIAA0921 1017 FDLGN----GPSLMKGNS--DKPVNDNQWHNVVVSRDpGNVHTLKID-SR 1059 pvsges...t.LdldkeesgplylGGlPe.........lpvspgFrGCir +v+++s++ ++Ldl+ g ly+GGl + ++ ++ +++++gF+GC+ mKIAA0921 1060 TVTQHSngaRnLDLK----GELYIGGLSKnmfsnlpklVASRDGFQGCLA 1105 nlrvngk<-* ++ +ng+ mKIAA0921 1106 SVDLNGR 1112 EGF: domain 3 of 3, from 1137 to 1171: score 11.3, E = 26 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg..rCe<-* C ++ C n G+C+ +++tC+C +g++ C mKIAA0921 1137 TCTeeSCANQ-----GVCLqqwdGFTCdCT-MTSYGgpVCN 1171 LamG: domain 6 of 6, from 1199 to 1355: score 56.7, E = 3e-12 *->t.lsisfsFrTtspnGlLlyag....ggdflaleLvlEDsdgdGrlv + ++ + F T + +++L+ +++ ++ gd+l+l++ +G++ mKIAA0921 1199 RmDRLAVGFSTHQRSAVLVRVDsasgLGDYLQLHID------QGTVG 1239 lrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDgg + ++ G ++ ++ +++ ++DG++H V+++r+g+++tL+VD + mKIAA0921 1240 VIFNVGT---DDITIDEPN----AIVSDGKYHVVRFTRSGGNATLQVD-S 1281 npvsges....................................t.Ldldk pv+++ + ++ ++++ +++ + + ++ ++ +++++ t ++++ mKIAA0921 1282 WPVNERYpagnfdnerlaiarqripyrlgrvvdewlldkgrqlTiFNSQ- 1330 eesgplylGGlPelpvspgFrGCirnlrvngk<-* + + +GG+ +F+G +++l++ng mKIAA0921 1331 ---AAIKIGGRD---QGRPFQG-VSGLYYNGL 1355 4.1m: domain 1 of 1, from 1500 to 1518: score 29.0, E = 0.00064 *->myrykkRdkGSYhtnEakg<-* my+y++Rd+GSY ++ +++ mKIAA0921 1500 MYKYRNRDEGSYQVDQSRN 1518 [output cut off at A = 10 top alignments] //