hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj08110/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0918 ( 839 res) mfj08110 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_TYP Leucine-rich repeats, typical (most populate 137.6 1.3e-36 9 LRRCT Leucine rich repeat C-terminal domain 56.8 2.8e-12 2 LRR_PS Leucine-rich repeat, plant-specific subfamil 28.5 0.00091 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_PS 1/6 10 32 .. 1 24 [] 0.8 9.4e+02 LRR_TYP 1/9 10 33 .. 1 24 [] 24.1 0.019 LRR_TYP 2/9 34 57 .. 1 24 [] 20.1 0.3 LRR_PS 2/6 34 57 .. 1 24 [] 5.8 2.1e+02 LRR_PS 3/6 58 80 .. 1 24 [] 14.5 15 LRR_TYP 3/9 58 81 .. 1 24 [] 21.4 0.12 LRR_TYP 4/9 84 105 .. 1 24 [] 5.6 87 LRRCT 1/2 117 167 .. 1 55 [] 32.5 5.6e-05 LRR_TYP 5/9 315 337 .. 1 24 [] 11.4 17 LRR_PS 4/6 338 360 .. 1 24 [] 10.4 53 LRR_TYP 6/9 338 361 .. 1 24 [] 32.5 5.8e-05 LRR_PS 5/6 362 384 .. 1 24 [] 6.9 1.5e+02 LRR_TYP 7/9 362 385 .. 1 24 [] 25.2 0.0089 LRR_PS 6/6 386 408 .. 1 24 [] 7.8 1.2e+02 LRR_TYP 8/9 386 409 .. 1 24 [] 30.2 0.00028 LRR_TYP 9/9 410 433 .. 1 24 [] 2.3 2.2e+02 LRRCT 2/2 445 495 .. 1 55 [] 25.2 0.009 Alignments of top-scoring domains: LRR_PS: domain 1 of 6, from 10 to 32: score 0.8, E = 9.4e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L+ L++L+L+nN+L + ++ + mKIAA0918 10 LRGLRRLHLNNNKLE-LLRDDTFL 32 LRR_TYP: domain 1 of 9, from 10 to 33: score 24.1, E = 0.019 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+ Lr+L+L+nN+L+ L +++F g mKIAA0918 10 LRGLRRLHLNNNKLELLRDDTFLG 33 LRR_TYP: domain 2 of 9, from 34 to 57: score 20.1, E = 0.3 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL+ L ++N ++ + p+aF+ mKIAA0918 34 LENLEYLQVDYNYISVIEPNAFGK 57 LRR_PS: domain 2 of 6, from 34 to 57: score 5.8, E = 2.1e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L++L + +N +s P +g+ mKIAA0918 34 LENLEYLQVDYNYISVIEPNAFGK 57 LRR_PS: domain 3 of 6, from 58 to 80: score 14.5, E = 15 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L+ LqvL L++N LsG +P +l++ mKIAA0918 58 LHMLQVLILNDNLLSG-LPNNLFR 80 LRR_TYP: domain 3 of 9, from 58 to 81: score 21.4, E = 0.12 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+ L++L L++N L+ LP+++F+ mKIAA0918 58 LHMLQVLILNDNLLSGLPNNLFRF 81 LRR_TYP: domain 4 of 9, from 84 to 105: score 5.6, E = 87 *->LpnLreLdLsnNqLtsLP.pgaFqg<-* L++LdL +N+L+ LP g++q+ mKIAA0918 84 ---LTHLDLRGNRLKLLPyVGLLQH 105 LRRCT: domain 1 of 2, from 117 to 167: score 32.5, E = 5.6e-05 *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll NP+nC+CeL L++wl+ ++ + +++C++P +l+G + l+ mKIAA0918 117 NPWNCSCELISLKDWLDS--ISYSALVG-DVVCETPFRLHG-RDLDE 159 lpsefsCp<-* + + Cp mKIAA0918 160 VSKQELCP 167 LRR_TYP: domain 5 of 9, from 315 to 337: score 11.4, E = 17 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + L L+L+nN+++ + ++aF++ mKIAA0918 315 -TGLDLLHLGNNRISMIQDRAFGD 337 LRR_PS: domain 4 of 6, from 338 to 360: score 10.4, E = 53 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L++L+L++N++ + ++l+ mKIAA0918 338 LGNLRRLYLNGNRIE-RLSPELFY 360 [output cut off at A = 10 top alignments] //