hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj08110/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0918  ( 839 res)   mfj08110

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             79.4    7.5e-20   9
LRRNT    Leucine rich repeat N-terminal domain           24.3     0.0029   1
GRP      Glycine rich protein family                    -16.4      0.023   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_1      1/9      12    35 ..     1    25 []    12.8      8.3
LRR_1      2/9      36    59 ..     1    25 []    14.7      2.2
LRR_1      3/9      60    82 ..     1    25 []     8.8       69
LRR_1      4/9      83   104 ..     1    25 []     9.4       56
LRRNT      1/1     255   288 ..     1    34 []    24.3   0.0029
LRR_1      5/9     316   339 ..     1    25 []    11.6       19
LRR_1      6/9     340   363 ..     1    25 []    17.1     0.41
LRR_1      7/9     364   387 ..     1    25 []    12.7      8.9
LRR_1      8/9     388   408 ..     1    25 []    10.9       32
LRR_1      9/9     411   432 ..     1    25 []     9.4       55
GRP        1/1     551   619 ..     1   134 []   -16.4    0.023

Alignments of top-scoring domains:
LRR_1: domain 1 of 9, from 12 to 35: score 12.8, E = 8.3
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                       L+ L+L++ N +l+  l ++++ gl    
   mKIAA0918    12    GLRRLHLNN-N-KLE-LLRDDtFlGLE    35   

LRR_1: domain 2 of 9, from 36 to 59: score 14.7, E = 2.2
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      nLe+L +++ N ++s  ++p+++++l    
   mKIAA0918    36    NLEYLQVDY-N-YIS-VIEPNaFgKLH    59   

LRR_1: domain 3 of 9, from 60 to 82: score 8.8, E = 69
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                       L++L L++ N  ls  lp++l  +    
   mKIAA0918    60    MLQVLILND-N-LLS-GLPNNLfRFV    82   

LRR_1: domain 4 of 9, from 83 to 104: score 9.4, E = 56
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                       L++LdL+g N +l + lp   + l+   
   mKIAA0918    83    PLTHLDLRG-N-RL-KLLPY-VgLLQ    104  

LRRNT: domain 1 of 1, from 255 to 288: score 24.3, E = 0.0029
                   *->aCpapCtCser.ytdglvVdCsgrgLtvavPrdlP<-*
                       Cp  CtC  +  + gl+V+C++r+   ++    P   
   mKIAA0918   255    ECPTACTCNLQiSDLGLNVNCQERKIE-SIAELQP    288  

LRR_1: domain 5 of 9, from 316 to 339: score 11.6, E = 19
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                       L  L+L++ N ++s  +++ ++++l    
   mKIAA0918   316    GLDLLHLGN-N-RIS-MIQDRaFgDLG    339  

LRR_1: domain 6 of 9, from 340 to 363: score 17.1, E = 0.41
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      nL+ L+L+g N +++  l+p+ + gl+   
   mKIAA0918   340    NLRRLYLNG-N-RIE-RLSPElFyGLQ    363  

LRR_1: domain 7 of 9, from 364 to 387: score 12.7, E = 8.9
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +L++L L++ N  + +++++++++  p   
   mKIAA0918   364    SLQYLFLQY-N-LI-REIQAGtFdPVP    387  

LRR_1: domain 8 of 9, from 388 to 408: score 10.9, E = 32
                   *->nLeeLdLsgCNpslsgslppslglp<-*
                      nL+ L L++ N +l+  +p++ +++   
   mKIAA0918   388    NLQLLFLNN-N-QLQ-AMPSG-VFS    408  

LRR_1: domain 9 of 9, from 411 to 432: score 9.4, E = 55
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L  L+L+g N s++ slp   ++l    
   mKIAA0918   411    TLLRLNLRG-N-SFT-SLPV-SgVLD    432  

GRP: domain 1 of 1, from 551 to 619: score -16.4, E = 0.023
                   *->MASKallLLGLlLAavLLisSEVaaadltEeaeksnteKseseeeVq
                        S  l+++   ++a+ L +  + ++             s+ +++ +
   mKIAA0918   551    --SLLLVFIMSVFVAAGLFVLVMKRRKK---------NQSDHTSTNN 586  

                   ddkyGGgGyhgGGynGGGGgGfgggGgGGYgGgGGggygGGGyygGGGGY
                    d    + ++                ++ YgGgGG   gGGG+++     
   mKIAA0918   587 SDVS--SFNM---------------QYSVYGGGGG---GGGGHPHA---- 612  

                   gGGGghvayGGgGGgygGGGGypGGyGngGGGYgGGG<-*
                        hv                         +++G+   
   mKIAA0918   613 -----HV-------------------------HHRGP    619  

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