hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid15017/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0915  ( 438 res)   mid15017

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   Guanine nucleotide exchange factor for Rho/R   182.9    3.1e-50   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1      18   197 ..     1   211 []   182.9  3.1e-50

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 18 to 197: score 182.9, E = 3.1e-50
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                       l+E +++E++Y+r+L++l+++f      ++       l+p++++tl
   mKIAA0915    18    SLFEVVTSEASYLRSLRLLTDTFVLSQALRD------TLTPRDHHTL 58   

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   F+ N++ + ++++rFL +L  rv+ +           ++i d ++++ ++
   mKIAA0915    59 FS-NVQRVQSVSERFLGTLLSRVRSS-----------PHITDLCDVVHAH 96   

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                    +++      f +Y  Y++n+++++e+++ Lm  ++n +F+++l++++s 
   mKIAA0915    97 AVGP------FFVYVDYVRNQQYQEETYSRLM--DTNVRFSAELRRLQSL 138  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   p c+     rl+L+s+L++P+QR+t+  +LL+++l  t+++++ +e+++k
   mKIAA0915   139 PKCE-----RLPLPSFLLLPFQRITRLRMLLQNILSQTEEGSSRQENAQK 183  

                   AleaikelasqvNe<-*
                   Al+a+ ++++++ +   
   mKIAA0915   184 ALGAVSKIIERCSA    197  

//