hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid15017/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0915  ( 438 res)   mid15017

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   RhoGEF domain                                   75.3    1.2e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1      18   197 ..     1   207 []    75.3  1.2e-18

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 18 to 197: score 75.3, E = 1.2e-18
                   *->vlkElleTEkkYvrdLeildnvym..kpLreaaisskpvltpddiet
                       l+E++++E+ Y+r+L++l +++  ++ Lr+        ltp+d +t
   mKIAA0915    18    SLFEVVTSEASYLRSLRLLTDTFVlsQALRD-------TLTPRDHHT 57   

                   iFsNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlk
                   +FsN+    ++  +FL+  L  r++ss           p+   l d++ +
   mKIAA0915    58 LFSNVQRVQSVSERFLG-TLLSRVRSS-----------PHITDLCDVVHA 95   

                   lke..pflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassnt
                   + + +pf+ vY  Y++n++y +e+ ++l    +n  F  +l +++  + +
   mKIAA0915    96 H-AvgPFF-VYVDYVRNQQYQEETYSRLM--DTNVRFSAELRRLQSLPKC 141  

                   gAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkk
                   +      +l L+s+Ll P qRi+r   LL+ +L+ t e  +++  e+++k
   mKIAA0915   142 E------RLPLPSFLLLPFQRITRLRMLLQNILSQTEE--GSSRQENAQK 183  

                   aldllqdlaksiNe<-*
                   al+++  ++++  +   
   mKIAA0915   184 ALGAVSKIIERCSA    197  

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