hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg12625/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0911  ( 1035 res)   mbg12625

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CA       Cadherin repeats.                               82.8      4e-20   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CA         1/2     125   218 ..     1   121 []    55.5  6.7e-12
CA         2/2     241   319 ..     1   121 []    27.3   0.0021

Alignments of top-scoring domains:
CA: domain 1 of 2, from 125 to 218: score 55.5, E = 6.7e-12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils......lFsIdpetGtng
                      + A D+Ds+     +     e+  + i +++ + +   +d++tG   
   mKIAA0911   125    LIALDKDSP--LRFAG----EICGFKIHGqnvpfdAVVVDKSTG--- 162  

                   psLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                         e+ii++++ LD E q         + Yt+t++A D G  p g++
   mKIAA0911   163 ------EGIIRSKEKLDCELQ---------KDYTFTIQAYDCGKGPDGTG 197  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                    +         +s  atv+++V DvN+ aP   
   mKIAA0911   198 VK---------KSHKATVHIQVNDVNEYAP    218  

CA: domain 2 of 2, from 241 to 319: score 27.3, E = 0.0021
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      v A+DaD     + ++     + +Y+il ++ +F++d+++       
   mKIAA0911   241    VEAVDADCS--PQFSQ-----ICSYEILTpdvPFTVDKDG------- 273  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                         i+ t+ L++ +           +Y Ltv+A D G  +       
   mKIAA0911   274 -----YIKNTEKLNYGKE---------HQYKLTVTAYDCGKKR------- 302  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                            +  + v + V+      P   
   mKIAA0911   303 --------ATEDVLVKISVKP--TCSP    319  

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