hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg12625/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0911  ( 1035 res)   mbg12625

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cadherin Cadherin domain                                 41.3    2.1e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cadherin   1/2     108   211 ..     1   107 []    12.3      0.1
Cadherin   2/2     225   314 ..     1   107 []    29.0  0.00011

Alignments of top-scoring domains:
Cadherin: domain 1 of 2, from 108 to 211: score 12.3, E = 0.1
                   *->ysasvpEnapvGtevl..tvtAtDaDdPlgpN...grirYsilggnp
                      y++ v En   +t +l++ + A D+D  +++   ++   ++i g+n+
   mKIAA0911   108    YHGIVTEN--DNTVLLdpPLIALDKD--SPLRfagEICGFKIHGQNV 150  

                   .ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasg
                   + +   +d+ tG+  gii+ ++ LD+E +    Y++t+ A D+       
   mKIAA0911   151 pFDAVVVDKSTGE--GIIRSKEKLDCELQ--KDYTFTIQAYDC------- 189  

                   ggpp......lsstatvtitVl<-*
                   g  p++++ ++s  atv+i+V    
   mKIAA0911   190 GKGPdgtgvkKSHKATVHIQVN    211  

Cadherin: domain 2 of 2, from 225 to 314: score 29.0, E = 0.00011
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgri.rYsilggnpggwF
                      y a v E+ +  +++l+v A+DaD  +++ ++i +Y il +++   F
   mKIAA0911   225    YKAAVVEGKQ-HSSILRVEAVDADC-SPQFSQIcSYEILTPDV--PF 267  

                   rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl
                   ++d+ +G     i+ t+ L++ +    +Y Ltv A D+       g +  
   mKIAA0911   268 TVDK-DGY----IKNTEKLNYGKE--HQYKLTVTAYDC-------GKKRA 303  

                   sstatvtitVl<-*
                   +  + v i+V    
   mKIAA0911   304 TEDVLVKISVK    314  

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