hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg06264/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0910 ( 1584 res) mbg06264 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Syja_N SacI homology domain 512.8 2.5e-150 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase fa 166.0 6.4e-46 1 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD -1.8 0.35 1 MPPN MPPN (rrm-like) domain -25.3 0.27 1 Extensin_2 Extensin-like region -146.4 0.94 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Syja_N 1/1 69 357 .. 1 366 [] 512.8 2.5e-150 Exo_endo_phos 1/1 545 876 .. 1 202 [] 166.0 6.4e-46 RRM_1 1/1 922 976 .. 1 74 [] -1.8 0.35 MPPN 1/1 911 990 .. 1 143 [] -25.3 0.27 Extensin_2 1/1 1030 1322 .. 1 385 [] -146.4 0.94 Alignments of top-scoring domains: Syja_N: domain 1 of 1, from 69 to 357: score 512.8, E = 2.5e-150 *->iyGllGlIkLkggdvmLyYLivITgkskVGqigpghaIYkitdvdfi +yGllG+++L++gd mL+YL+++Tg+++VG+i+ + +++++t ++fi mKIAA0910 69 AYGLLGVLRLNLGDTMLHYLVLVTGCMSVGKIQ-ESEVFRVTSTEFI 114 slnndsvdetdiekkDEarylkihPdgisTdtqeklpkhPcslLkkvLst sl+ d de+ ++ +++kvL++ mKIAA0910 115 SLRVDASDED---------RIS--------------------EVRKVLNS 135 gtFYFSytyDltntLQrnskvlraplenlessvdradesifdiITdyner g+FYF+++ +++ ++ ++ ++++ ++++++++ mKIAA0910 136 GNFYFAWSASGVSLDLSLN-----AHRSMQEHTTDNR------------- 167 FvWNsfLleelinfRshLdneekqqlnverFllpvIhGfikqaslyvngk F+WN+ L+ +l+ ++ +n++++ll++++G ++++++y+ +k mKIAA0910 168 FFWNQSLHLHLK----------HYGVNCDDWLLRLMCGGVEIRTIYAAHK 207 tisltLISRRStkRAGTRFlkRGvnddGhVANFVETEQIVydsdskseka +++++LISR+S++RAGTRF++RG+nddGhVANFVETEQ++y +d +s mKIAA0910 208 QAKACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVIYLDDCVS--- 254 rysSFVQvRGSIPLFWeQdvegsnLsyKPlivlrsveatapafdrHFddl SF+Q+RGS+PLFWeQ+ g++++++++++ r++ea+apafdrHF++l mKIAA0910 255 ---SFIQIRGSVPLFWEQP--GLQVGSHRVRMSRGFEANAPAFDRHFRTL 299 kqrYGnpivIvNLiktkkekEkplsklyeeflkaseylnsflpeeekiry k +YG ++++vNL+++ ke+E++lsk+++++lkase++ + i++ mKIAA0910 300 KDLYG-KQIVVNLLGS-KEGEHMLSKAFQSHLKASEHASD-------IHM 340 tsFDFHkeckqmnmswdrl<-* +sFD+H+++k+ ++++l mKIAA0910 341 VSFDYHQMVKGG--KAEKL 357 Exo_endo_phos: domain 1 of 1, from 545 to 876: score 166.0, E = 6.4e-46 *->lkvltwNvnglra.l.l......llellredpDvicLQEvklsp.sl ++v+twNvng ++ + ++++l ++l p + ++QE +++ ++ mKIAA0910 545 VCVGTWNVNGGKQfRsIafknqtLTDWLLDAPKLAGIQEFQDKRsKP 591 ll.l.ll.gyv....................................... + + + + ++ + ++++++ +++ +++++ + mKIAA0910 592 TDiFaIGfEEMvelnagnivnasttnqklwavelqktisrdnkyvllase 641 ..........................vytgfgg.gggkgGVailsklpll + + ++++ + ++ ++v+tg+gg +g+kg+Vai++ ++ mKIAA0910 642 qlvgvclfvfirpqhapfirdvavdtVKTGMGGaTGNKGAVAIRMLFH-- 689 svilgidfirvilasgt.fvvvntHlpagg.rldeRlaqyaelldflsf. t++++v++H++ag++ + eR++++ e++++lsf+ mKIAA0910 690 ---------------TTsLCFVCSHFAAGQsQVKERNEDFVEIARKLSFp 724 ......rsdpvilcGDfNarpdeidsa.lk.igkstl............. ++ ++d+v++cGDfN+r+d ++ + + i+++++++ +++ +++ mKIAA0910 725 mgrmlfSHDYVFWCGDFNYRIDLPNEEvKElIRQQNWdsliagdqlinqk 774 ..........elpigfppTywsyrgs.....sekkrtpsrlDrilvsg.l + ++ ++ e++ +f+pTy+++ s++ ++sek+rtp+++Dr+l++++ mKIAA0910 775 nagqifrgflEGKVTFAPTYKYDLFSedydtSEKCRTPAWTDRVLWRRrK 824 l.rvvil.ille...........................vlgSDHrPVla + +++ l++ + + +++++ + ++++ + ++ +++ SDHrPV+a mKIAA0910 825 WpFDRSAeDLDLlnasfqdeskilytwtpgtllhygraeLKTSDHRPVVA 874 tl<-* + mKIAA0910 875 LI 876 RRM_1: domain 1 of 1, from 922 to 976: score -1.8, E = 0.35 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV d+ ++L + F++fG+++ i+ v D V mKIAA0910 922 --------DALIDELLRQFAHFGEVILIRFVED----------KMWV 950 eFedeedAekAldalnGkelggrelrv<-* +F ++A Al+ lnGkel +r++++ mKIAA0910 951 TFLEGSSALNALS-LNGKELLNRTITI 976 MPPN: domain 1 of 1, from 911 to 990: score -25.3, E = 0.27 *->gekedsdtwsdlsAVtVFGFPpsitnlvLlhFsrfGeIvshvrvlks +++ ++t F ++ ++L++F++fGe++ mKIAA0910 911 KSSAQESTF----------FDDALIDELLRQFAHFGEVILI------ 941 skglnpktfRiFHnHDtGCDEnDstvnksitLksksneltakKYpiptng mKIAA0910 942 --------------------------------------------RFVEDK 947 NWmhltYssrssAaKALskNGt.iingsvivGVkyspatdKqvinkk<-* W+ t + ssA ALs NG++++n ++ + k +++++ mKIAA0910 948 MWV--TFLEGSSALNALSLNGKeLLNRTITITLKSP--DWIKHLEEE 990 Extensin_2: domain 1 of 1, from 1030 to 1322: score -146.4, E = 0.94 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy + + l+ s++ s+sS P ++ +SP P mKIAA0910 1030 AEVEELLPQHLQPSSSSGLGTSPSSSPRTSPC---QSPTVPE----- 1068 kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSPPpPv Ys P P + S P mKIAA0910 1069 -----------YSAPSLP--IRPSRAPS---------------------- 1083 ykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSPPPPp + P PP+ SP ++ + S P k PPPP mKIAA0910 1084 ---RTPGPPS-------SQGSPVDTQPAAQKDSSQTLEP----KRPPPPR 1119 yvYksp.PpPvkkripyvYkSPPPPpPYvYkSpPppvkky.iyksppppe +v ++P+P ++ PPPP+ +Sp p k+++ pp p mKIAA0910 1120 PVAPPArPAPPQR--------PPPPSG--ARSPAPARKEFgGVGAPPSPG 1159 phkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppkyVYk + P P ++ + + P P+ p p y mKIAA0910 1160 VARREIEAPKSPG--------TARKDNIGRNQPSPQAGLAGPGPAGYGAA 1201 SpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPtyvYkSpPpPykp p P + + P ++ a r+ + +S P t + + p +p mKIAA0910 1202 RPTIPARAGVIS--APQSQARVCAGRPTPDSQSKPSETLKGPAVLP--EP 1247 ptppkiy.ksPPPPtPvyvYkspPpippiksssppPvyvYkSpPppvysP +p +++ P PtP + + p pi ++ pP S P p mKIAA0910 1248 LKPQAAFpQQPSLPTPAQKLQDPLV--PIAAPTMPP-----SGPQPNLET 1290 PPPyvYssPPPPvyvynsaPvykksPPkhhYiYsSPPPphh<-* PP PPP +s P s + P + mKIAA0910 1291 PPQ-----PPPRSRSSQSLP----SDSSPQLQQEQPTGQVK 1322 //