hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01711/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0909  ( 1183 res)   mbh01711

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CG-1     CG-1 domain                                    266.2    4.3e-76   1
TIG      IPT/TIG domain                                  37.0    4.2e-07   1
IQ       IQ calmodulin-binding motif                     24.4     0.0026   4
Ank      Ankyrin repeat                                  18.4       0.18   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CG-1       1/1      13   130 ..     1   123 []   266.2  4.3e-76
TIG        1/1     515   597 ..     1   105 []    37.0  4.2e-07
Ank        1/2     692   725 ..     1    33 []     9.0       10
Ank        2/2     737   770 ..     1    33 []     9.3      9.1
IQ         1/4    1030  1050 ..     1    21 []     8.5       34
IQ         2/4    1053  1073 ..     1    21 []     5.5       69
IQ         3/4    1083  1103 ..     1    21 []    19.3    0.089
IQ         4/4    1106  1126 ..     1    21 []     3.5  1.1e+02

Alignments of top-scoring domains:
CG-1: domain 1 of 1, from 13 to 130: score 266.2, E = 4.3e-76
                   *->lLeeaqsRWLrpeeilaiLinfqcekfeewltkssktrpqsGslfLF
                      lL+ ++ RW+++eei+ +Li+f  ek+ ewl   +ktrpq+Gs++L+
   mKIAA0909    13    LLPPERLRWNTNEEIASYLITF--EKHDEWLSCAPKTRPQNGSIILY 57   

                   dRKvLrYFRKDGHnWrKKKDGKTvkEAHErLKVGsvevLhcYYAHGedne
                   +RK+++Y RKDG+ W+K+KDGKT++E+H++LKV++ e+L+++Y+H+++ +
   mKIAA0909    58 NRKKVKY-RKDGYLWKKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVP 106  

                   tFqRRcYWLLdeelehIVLVHYldVk<-*
                   tF+RRcYWLL+++  +IVLVHYl+V+   
   mKIAA0909   107 TFHRRCYWLLQNP--DIVLVHYLNVP    130  

TIG: domain 1 of 1, from 515 to 597: score 37.0, E = 4.2e-07
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                        It++sP+++  +GG  + itG    ++            e+ +++
   mKIAA0909   515    NAITDFSPEWSYPEGGVKVLITGPWTEAA------------EHYSCV 549  

                   fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdggg.sgdgr
                   f+ ++vp+ +++      ++C++P++  g      v ++v g +++    
   mKIAA0909   550 FDHIAVPASLVQPGV---LRCYCPAHEvGL-----VSLQVAGREgP---- 587  

                   ssspvtFtYv<-*
                    s++v F+Y+   
   mKIAA0909   588 LSASVLFEYR    597  

Ank: domain 1 of 2, from 692 to 725: score 9.0, E = 10
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                       G++ LHlAa  g++++++ L + +  +    d    
   mKIAA0909   692    RGMSLLHLAAAQGYARLIETLSQwRSVETGSLDL    725  

Ank: domain 2 of 2, from 737 to 770: score 9.3, E = 9.1
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                        +TPL++A+  g+le + lL   +   l + d    
   mKIAA0909   737    FSCTPLMWACALGHLEAAVLLFCwNRQALSIPDS    770  

IQ: domain 1 of 4, from 1030 to 1050: score 8.5, E = 34
                   *->rraaikIQaawRGylaRkryk<-*
                       +aa +IQ a+R y+ R+  +   
   mKIAA0909  1030    YEAARVIQTAFRKYKGRRLKE    1050 

IQ: domain 2 of 4, from 1053 to 1073: score 5.5, E = 69
                   *->rraaikIQaawRGylaRkryk<-*
                      + aa +IQ+++R y++        
   mKIAA0909  1053    EVAAAVIQRCYRKYKQLTWIA    1073 

IQ: domain 3 of 4, from 1083 to 1103: score 19.3, E = 0.089
                   *->rraaikIQaawRGylaRkryk<-*
                      ++aai+IQ+ +R y   kr++   
   mKIAA0909  1083    TQAAILIQSKFRSYYEQKRFQ    1103 

IQ: domain 4 of 4, from 1106 to 1126: score 3.5, E = 1.1e+02
                   *->rraaikIQaawRGylaRkryk<-*
                      rraa++IQ ++R y+ R       
   mKIAA0909  1106    RRAAVLIQQHYRSYRRRPGPP    1126 

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