hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj16357/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0908 ( 501 res) mfj16357 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Prenylcys_lyase Prenylcysteine lyase 950.0 6.2e-282 1 Amino_oxidase Flavin containing amine oxidoreductas -50.4 0.7 1 DAO FAD dependent oxidoreductase -57.7 0.38 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DAO 1/1 32 256 .. 1 402 [] -57.7 0.38 Amino_oxidase 1/1 40 478 .. 1 481 [] -50.4 0.7 Prenylcys_lyase 1/1 124 501 .] 1 390 [] 950.0 6.2e-282 Alignments of top-scoring domains: DAO: domain 1 of 1, from 32 to 256: score -57.7, E = 0.38 *->DVvVIGGGivGlstAyhLak...rGlsVtllErgdigsGaSgrnaGl +++++G+Gi G s+Ay+L k+ + ++ ++Er+++g+ ++ mKIAA0908 32 RIAIVGAGIGGTSSAYYLRKkfgKDVKIDVFEREEVGG---RLATLK 75 lhpglryleqgrWllldlvreagkera.llarla.esrdlwreleleelg + ++ ++ +++++++l+ + ++++el g mKIAA0908 76 VQGH-----------------DYEAGGsVIHPLNlHMKRFVKEL-----G 103 id.cdfrrtGglylardeeeldlerlaaalralGlpedvelLdaeelrel ++++ Ggl+ ++ + l mKIAA0908 104 LSsVP--ASGGLVGVYNGKSLV---------------------------- 123 ePglspglvgalfypddghvdParlvraLaraAealGveilegteVtgle + ++ +++ +lv+ + + ++ + V++l mKIAA0908 124 ---FEE--------SSWFVINVIKLVWRYGFQ------SLRMHMWVEDLL 156 regggrvv.VeTedGeirAfiAdkVVnAaGawsdelarllgllprIvPYf + + + + + d + + +l g mKIAA0908 157 DKFMR-IYrYQSHDYAFSS-------------VEKLMHAIGG-------- 184 LkplrdiplrPvrGqvlvteplpealapallppdeavgdsrgvyiipreG + ++ +++ + + mKIAA0908 185 --------------------------DDYVRLLNQTLREN---------- 198 gvliGattdgrldfgggpeevsgdidvdlarleellerarrlfPqL.... +++s+ ++l+++ P + + mKIAA0908 199 ---------------LKKAGFSE----------TFLNEMI--APVMkvny 221 adadilrawaGlRpltpDglPiigtpDtskPviGrvpglpglyvatGhgg + + + a++G +lt+ +l+ + G + mKIAA0908 222 GQSTDINAFVGAVSLTAADS--------------------NLWAVEGGN- 250 hGltlapaiGkllAel<-* k++ mKIAA0908 251 ----------KIVCSG 256 Amino_oxidase: domain 1 of 1, from 40 to 478: score -50.4, E = 0.7 *->laGLaAAreLlraGfqdVtv.lEArdRvGGRvrtvrlkggdadgfli + G ++A++L + +dV +++ r+ vGGR+ t +++g+d + mKIAA0908 40 IGGTSSAYYLRKKFGKDVKIdVFEREEVGGRLATLKVQGHD-----Y 81 elGaqwflgaypnllnlllelglelglelfpftgdffldl.rrggrrpdv e G++++++ + + ++++elgl+ +++ + ++++ + + ++ ++ mKIAA0908 82 EAGGSVIHPLNLHMKRFVKELGLS-SVPASGGLVGVYNGKsLVFEESSWF 130 pt.lplp..............lelel.leeeirl.l.ll.allllapell ++ + + + ++ + + e+ l+ ++i++ ++ + a+ ++ + mKIAA0908 131 VInVIKLvwrygfqslrmhmwVEDLLdKFMRIYRyQsHDyAFSSVEKLMH 180 eldlesfsdrlsaqgflelalde................lfrsllagalg +++ +++ ++l++ + + l+ + +++ ++ + + ++++ + + mKIAA0908 181 AIGGDDYVRLLNQTLRENLKKAGfsetflnemiapvmkvNYGQSTDINAF 230 flelelsarlallslrlldledggatfpggglklplGgldqllaaaagll + ++l a+ ++l+++ +++ ++ + +++ + ++ +++++++ mKIAA0908 231 VGAVSLTAADSNLWAVEGGN--KIVCSGLLQASSSNLISGSVMSIEEK-- 276 ggrvrlntrVrsirqeg...dgvtvttedGetgtkgdesetieaDaVivt ++ +q g++++ +v++++G+ e+ + +D V v+ mKIAA0908 277 ----------TRTKQTGnptKMYEVVYKTGS------ETHSDFYDIVLVA 310 vPl.gvlkr.hlilflPpLpaakqeairrlgfgsvsKvflefetpfwpen +Pl++ +++ f+Pp+++ + ++ ++ f+ e mKIAA0908 311 APLnRKMSNiTFRNFDPPIEE------FNDPYQQLVTTFIKGELNST--- 351 gdhlfgaykgdlfgllvtdge.dlsrggyvldtskssgsapsggrgvlls l+++ ++d++ ++l t s++++ ls mKIAA0908 352 ---------------LFSSRPkDQFGLSAILVTDDSDMFIN------SLS 380 yvlgdgagnreledlsdeelleavledLrkllgsdredvpdPvtagdyrd v++ + e +++ v++ +++ ++ + mKIAA0908 381 IVASVRQ----KEGPPPAVDGMHVWKTFSRDILT--KEQISKL------- 417 tvvsrWstdpyargsysyppvgqdsrdrpalrepvgndnnkdgdpglyfA ++ ++++ + +++ y+++++ q + ++ + + y+ mKIAA0908 418 FLSYDYAVRKPWLS-YPHYEPPQK--CPSIILHDRL----------YYLN 454 GehtsggypgtveGAveSGlraArril<-* G + ++e +G++aA mKIAA0908 455 GIEFAAS---CMEMSAIAGYNAALLAY 478 Prenylcys_lyase: domain 1 of 1, from 124 to 501: score 950.0, E = 6.2e-282 *->leetdwfiiNvlkLvwrYGlSlLRMkmwvEdvldkFmrIYrylehgy +ee++wf+iNv+kLvwrYG+++LRM+mwvEd+ldkFmrIYry++h+y mKIAA0908 124 FEESSWFVINVIKLVWRYGFQSLRMHMWVEDLLDKFMRIYRYQSHDY 170 aFsnVEelLkalGgddfvnltkltlqEkLseaGlsqrFlnElVaavlrvn aFs+VE+l++a+Ggdd+v+l+++tl+E+L++aG+s++FlnE++a+v++vn mKIAA0908 171 AFSSVEKLMHAIGGDDYVRLLNQTLRENLKKAGFSETFLNEMIAPVMKVN 220 YGQStdinafAGAvSLagAdggLWSVEGGNklvcSgLlqaskvNlHIhgk YGQStdinaf+GAvSL++Ad++LW+VEGGNk+vcSgLlqas++Nl I+g+ mKIAA0908 221 YGQSTDINAFVGAVSLTAADSNLWAVEGGNKIVCSGLLQASSSNL-ISGS 269 VesIEEKTkTkyleNgkkLYeVvYkigkgnssDfYDiVVVATPLnLDrsm V+sIEEKT+Tk+++N++k+YeVvYk+g++++sDfYDiV+VA+PL +r+m mKIAA0908 270 VMSIEEKTRTKQTGNPTKMYEVVYKTGSETHSDFYDIVLVAAPL--NRKM 317 sNitfanFdPpIeefkrkyQhtvttlVkGeLNssyFGvrpeddfpLatil sNitf+nFdPpIeef+++yQ++vtt++kGeLNs++F++rp+d+f+L++il mKIAA0908 318 SNITFRNFDPPIEEFNDPYQQLVTTFIKGELNSTLFSSRPKDQFGLSAIL 367 tlDdpdlFinsisIvPvtelkserrKeGpppqsqgaaVyKvfsrkpLtks ++Dd+d+Fins+sIv +s+r+KeGppp+++g++V+K+fsr++Ltk+ mKIAA0908 368 VTDDSDMFINSLSIV-----ASVRQKEGPPPAVDGMHVWKTFSRDILTKE 412 QLdkLFesydyvvkkeWDlAYPkYsapeklpsfiLhDHrLyYLNaiEgAA Q++kLF+sydy+v+k+W l+YP+Y++p+k+ps+iLhD rLyYLN+iE+AA mKIAA0908 413 QISKLFLSYDYAVRKPW-LSYPHYEPPQKCPSIILHD-RLYYLNGIEFAA 460 ScMElsAiAAkNiAlLiyeRwngkedlssiDqddLmhkLkteL<-* ScME+sAiA++N+AlL+y+Rwng+ed+ iDqddL+++LkteL mKIAA0908 461 SCMEMSAIAGYNAALLAYHRWNGNEDM--IDQDDLYERLKTEL 501 //