hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00351/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0904  ( 1051 res)   mpg00351

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Pkinase     Protein kinase domain                       331.8    7.7e-96   1
Pkinase_Tyr Protein tyrosine kinase                      57.2      2e-15   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pkinase_Tyr   1/1     299   558 ..     1   272 []    57.2    2e-15
Pkinase       1/1     299   592 ..     1   287 []   331.8  7.7e-96

Alignments of top-scoring domains:
Pkinase_Tyr: domain 1 of 1, from 299 to 558: score 57.2, E = 2e-15
                   *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLk.....eigas
                      + ++  +GeG +G Vyk++ k    +t+  VA K+++ ++++e g  
   mKIAA0904   299    FDIIGIIGEGTYGQVYKAKDK----DTGELVALKKVRldnekE-GFP 340  

                   seeieredFlrEAsiMkklGdHpNiVrLlGvct.........kegePggp
                     +      +rE++i+++l  H+ +V++  ++t++++  + +k+++    
   mKIAA0904   341 ITA------IREIKILRQL-VHQSVVNMKEIVTdkqdaldfkKDKGA--- 380  

                   glyiVtEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLeskn
                     y+V+Eym + dL   L +     +++  +  sf+ Q  +G++Y + kn
   mKIAA0904   381 -FYLVFEYMDH-DLMGLLESG--LVHFSEDHIKSFMKQLMEGLDYCHKKN 426  

                   fvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWm
                   f HRD+ + N+L+++++++K +DFGLaR+ yn ++  r  ++  +     
   mKIAA0904   427 FLHRDIKCSNILLNNSGQIKLADFGLARL-YNSEES-RPYTNKVITLWYR 474  

                   APEslkygk.FtskSDVWSFGVlLWEiftlGeqP.FYpgmsneevlelly
                   +PE l   +++t + DVWS G+ L E+ft  ++P F +++  ++ lel+ 
   mKIAA0904   475 PPELLLGEErYTPAIDVWSCGCILGELFT--KKPiFQANLELAQ-LELI- 520  

                   edGyRLprPenCPdelYdlMlqCWaedPedRPtFselverL<-*
                    +    p+P   Pd +       ++ + + R   + l+e++   
   mKIAA0904   521 SRLCGSPCPAVWPDVIKLPYFNTMKPKKQYR---RRLREEF    558  

Pkinase: domain 1 of 1, from 299 to 592: score 331.8, E = 7.7e-96
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      + +++++G+G++G+Vykak+k+tg++VA+K++++++ek+++++ta+r
   mKIAA0904   299    FDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIR 345  

                   rsEiqilkrLsHpNIvrlidvfed..........kdhlylVlEycegGL.
                     Ei+il+ L H  +v ++++++d+++  + +++k+  ylV+Ey++++L 
   mKIAA0904   346 --EIKILRQLVHQSVVNMKEIVTDkqdaldfkkdKGAFYLVFEYMDHDLm 393  

                   rlldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLK
                   +ll+             +  sed++k++++Q+ +gl+Y+H+++++HRD+K
   mKIAA0904   394 GLLESG--------LVHF--SEDHIKSFMKQLMEGLDYCHKKNFLHRDIK 433  

                   PeNILldengvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvl
                    +NILl++ g++    K+aDFGlA++++ + s+++t  v T+wY++PE+l
   mKIAA0904   434 CSNILLNNSGQI----KLADFGLARLYNSeESRpYTNKVITLWYRPPELL 479  

                   lggngygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgp
                   lg + y++++DvWS+G+il el+t+kp+F+      +l ql+li +  g 
   mKIAA0904   480 LGEERYTPAIDVWSCGCILGELFTKKPIFQAN---LeLAQLELISRLCGS 526  

                   plefdspewdsisrse.fr.........r.l.pnlseeakdLikkcLnkD
                   p +  +p ++  +++++  ++++ +++ r+    ++++a+dL++ +L++D
   mKIAA0904   527 PCPAVWPDVIKLPYFNtMKpkkqyrrrlReEfSFIPSAALDLLDHMLTLD 576  

                   PskRltaeeilqHPwf<-*
                   PskR+tae+ lq++++   
   mKIAA0904   577 PSKRCTAEQTLQSDFL    592  

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