hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01081/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0903  ( 1242 res)   mfj01081

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology domain                        66.4    3.5e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/1     466   564 ..     1   100 []    66.4  3.5e-15

Alignments of top-scoring domains:
CH: domain 1 of 1, from 466 to 564: score 66.4, E = 3.5e-15
                   *->eeeallrWinsll......kvtnfssdlkDGvvLckLlnslsPagsv
                      + + ll W+++++++ ++ k+tnf++++++G+ +c+ l++++P +++
   mKIAA0903   466    ASQSLLAWCREVTknyrgvKITNFTTSWRNGLSFCAILHHFRP-DLI 511  

                   dkkk..rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkkl
                   d+k  ++++  eN + a +   ++      g+  l++p+D+v      ++
   mKIAA0903   512 DYKSlnPQDIKENNKKAYDGFASI------GISRLLEPSDMVLLA--IPD 553  

                   ilgviwtLirl<-*
                    l+v+++L+++   
   mKIAA0903   554 KLTVMTYLYQI    564  

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