hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01081/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0903  ( 1242 res)   mfj01081

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology (CH) domain                  114.1    2.6e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/1     466   569 ..     1   121 []   114.1  2.6e-30

Alignments of top-scoring domains:
CH: domain 1 of 1, from 466 to 569: score 114.1, E = 2.6e-30
                   *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL
                      + + ll+W+++v+++y+g         v+itnf+t+w+ +Gl +ca+
   mKIAA0903   466    ASQSLLAWCREVTKNYRG---------VKITNFTTSWR-NGLSFCAI 502  

                   lnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDi
                   l+++rP+lid+k   sl+++d  eN ++a d + ++G  i  +l++p D+
   mKIAA0903   503 LHHFRPDLIDYK---SLNPQDIKENNKKAYDGFASIG--I-SRLLEPSDM 546  

                   vegnpdPDeklvltllwqLirrfq<-*
                   v     PD++ v+t+l q+  +f+   
   mKIAA0903   547 VLLAI-PDKLTVMTYLYQIRAHFS    569  

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