hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09814/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0902  ( 1058 res)   mbg09814

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     77.0    2.3e-18   1
SAM      Sterile alpha motif.                            75.9    4.8e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/1      83   151 ..     1    67 []    75.9  4.8e-18
PH         1/1     597   697 ..     1    82 []    77.0  2.3e-18

Alignments of top-scoring domains:
SAM: domain 1 of 1, from 83 to 151: score 75.9, E = 4.8e-18
                   *->vs.wspesVaeWLesigleq..YadnFrkngidgeelllltseedLk
                      vs+wsp++V +W ++++ + ++Y++nF++++i+g++ll+ t ++ L+
   mKIAA0902    83    VSkWSPSQVVDWMKGLDDCLqqYIKNFEREKISGDQLLRIT-HQELE 128  

                   elGitllGhRkkIlsaiqklkeq<-*
                   +lG++++Gh+  Il a+  l +    
   mKIAA0902   129 DLGVSRIGHQELILEAVDLLCAL    151  

PH: domain 1 of 1, from 597 to 697: score 77.0, E = 2.3e-18
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk...kpkgs
                        +eGwL kk++ ++  +++wkk++fvL++ +L++y +++++k  g+
   mKIAA0902   597    GDCEGWLWKKKdaksyfSqKWKKYWFVLKDASLYWYINEedeKAEGF 643  

                   ipLsgcsvre.p......cFeivt.dr.tlllqAeseeereeWvealqsa
                   i+L + ++++  + +++ +F+ ++++ ++++++Ae  +++++W++ ++++
   mKIAA0902   644 ISLPEFKIDRaSecrkkyAFKACHpKIkSFYFAAEHLDDMNRWLNRINML 693  

                   iaka<-*
                   +a +   
   mKIAA0902   694 TAGY    697  

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