hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09814/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0902  ( 1058 res)   mbg09814

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF1170  Protein of unknown function (DUF1170)          486.3   2.4e-142   1
SAM_1    SAM domain (Sterile alpha motif)                77.4    2.9e-19   1
PH       PH domain                                       75.6      1e-18   1
SAM_2    SAM domain (Sterile alpha motif)                49.9    5.4e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM_1      1/1      84   148 ..     1    66 []    77.4  2.9e-19
SAM_2      1/1      83   151 ..     1    72 []    49.9  5.4e-11
DUF1170    1/1     358   541 ..     1   228 []   486.3 2.4e-142
PH         1/1     597   695 ..     1    92 []    75.6    1e-18

Alignments of top-scoring domains:
SAM_1: domain 1 of 1, from 84 to 148: score 77.4, E = 2.9e-19
                   *->dgwsvesVgeWLesigl...lgqYidnFlaagyidgdtllqlteeDL
                      + ws+++V +W++  gl++ l+qYi+nF ++++i+gd+ll++t ++L
   mKIAA0902    84    SKWSPSQVVDWMK--GLddcLQQYIKNF-EREKISGDQLLRITHQEL 127  

                   edlGvtllGHrkkIlssIqgLk<-*
                   edlGv ++GH+  Il ++ +L    
   mKIAA0902   128 EDLGVSRIGHQELILEAV-DLL    148  

SAM_2: domain 1 of 1, from 83 to 151: score 49.9, E = 5.4e-11
                   *->veswslesvaeWLesi..glegqYkdnFsdqgitglellllrlteed
                      v+ ws+++v +W +++++ l +qY  nF++ +i+g ++l lr+t+++
   mKIAA0902    83    VSKWSPSQVVDWMKGLddCL-QQYIKNFEREKISG-DQL-LRITHQE 126  

                   LaklalGitsvghRkkilskiqelkqq<-*
                   L + +lG++  gh+  il +++ l      
   mKIAA0902   127 L-E-DLGVSRIGHQELILEAVDLLCAL    151  

DUF1170: domain 1 of 1, from 358 to 541: score 486.3, E = 2.4e-142
                   *->sPeSTidtslKkeksAllDLYIPPPPAvPYsPRDEkgslPCedyrGh
                      +P+STi+t++K+++sAl+DLYIPPPPA+PY+PRDEkg+lPCed+rGh
   mKIAA0902   358    TPSSTISTPTKRDSSALQDLYIPPPPAEPYIPRDEKGNLPCEDLRGH 404  

                   skgKqPLPvhKGSESPNSFLDQESyRrRFtIadsDqvLpgYsvEknvlpt
                   ++gK   PvhKGSESPNSFLDQE yR+RF+I+++D+vL++Y++Ek+++++
   mKIAA0902   405 MVGK---PVHKGSESPNSFLDQE-YRKRFNIVEEDTVLYCYEYEKGRSSS 450  

                   kGrRekTPsYGKlRPlSMPadgNWvGivdpfakprgdgRkGEdaLlRYfS
                   +GrRe+TP+YGKlRP+SMP+++NWvG++++++k+++d+R+ E++LlRY+S
   mKIAA0902   451 QGRRESTPTYGKLRPISMPVEYNWVGDYEDPNKMKRDSRR-ENSLLRYMS 499  

                   NErItPiiEESaseeYrFsRPlTERHLVRGADYiRGSRCYiNSDLHSSAT
                   NE+I       a+eeY+F+R                     NS       
   mKIAA0902   500 NEKI-------AQEEYMFQR---------------------NS------- 514  

                   iPFqeegtkKKSkssgdKssSPtepSLLvSl<-*
                       +++t+KKSk++gdKs+SP ++SLL+Sl   
   mKIAA0902   515 ----KKDTGKKSKKKGDKSNSPAHYSLLPSL    541  

PH: domain 1 of 1, from 597 to 695: score 75.6, E = 1e-18
                   *->vikeGwLlkkg.....gkkswkkRyfvLfndvLlyykdkk.kkpkgs
                        +eGwL+kk + ++ +  +wkk++fvL++ +L++y ++ ++k  g 
   mKIAA0902   597    GDCEGWLWKKKdaksyFSQKWKKYWFVLKDASLYWYINEEdEKAEGF 643  

                   ipLsgiqvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsa
                   i+L + +++++++ ++k++F+  ++  ++++++ae  +++++W++ i+++
   mKIAA0902   644 ISLPEFKIDRASECRKKYAFKACHpKIKSFYFAAEHLDDMNRWLNRINML 693  

                   ir<-*
                    +   
   mKIAA0902   694 TA    695  

//