hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp13317/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0900  ( 504 res)   mbp13317

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WH2      Wiskott Aldrich syndrome homology region 2      31.9      9e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WH2        1/1     442   459 ..     1    19 []    31.9    9e-05

Alignments of top-scoring domains:
WH2: domain 1 of 1, from 442 to 459: score 31.9, E = 9e-05
                   *->aRsaLLaqIrgqGkkLKKv<-*
                      aRs+LLa+Ir  G++LKKv   
   mKIAA0900   442    ARSDLLAAIR-MGIQLKKV    459  

//