hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/msh/msh07103/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0899 ( 967 res) msh07103 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Adaptin_N Adaptin N terminal region 716.5 1.2e-211 1 Alpha_adaptin_C Alpha adaptin AP2, C-terminal domain 339.6 3.5e-98 1 Alpha_adaptinC2 Adaptin C-terminal domain 139.0 8.3e-38 1 HEAT HEAT repeat 17.8 0.25 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- HEAT 1/3 216 247 .. 1 36 [] 5.1 47 HEAT 2/3 352 388 .. 1 36 [] 8.6 16 HEAT 3/3 391 428 .. 1 36 [] 5.0 49 Adaptin_N 1/1 58 619 .. 1 630 [] 716.5 1.2e-211 Alpha_adaptinC2 1/1 735 848 .. 1 125 [] 139.0 8.3e-38 Alpha_adaptin_C 1/1 854 966 .. 1 113 [] 339.6 3.5e-98 Alignments of top-scoring domains: HEAT: domain 1 of 3, from 216 to 247: score 5.1, E = 47 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* + + +++llnD++ V aA + + +la++ mKIAA0899 216 DwTS-----RVVHLLNDQHLGVVTAATSLITTLAQKN 247 HEAT: domain 2 of 3, from 352 to 388: score 8.6, E = 16 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* +ll + + l + l++ + + R+ A+e++++la+ mKIAA0899 352 PnLLVRACNQLGQFLQHRETNLRYLALESMCTLASSE 388 HEAT: domain 3 of 3, from 391 to 428: score 5.0, E = 49 *->e.lldellplllklln.DpdpeVReaAaeaLgalaevl<-* +++++ +++++++l++ d +VR+ A+ L a+++ mKIAA0899 391 HeAVKTHIETVINALKtERDVSVRQRAVDLLYAMCDRS 428 Adaptin_N: domain 1 of 1, from 58 to 619: score 716.5, E = 1.2e-211 *->ekkeitqelaeilnsfkddKkLdpykkkdavkKliylimlGnedisf e k+i++ela+i+++fk dK+Ld+y+kk++v+Kl+++++lG +di+f mKIAA0899 58 EIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLG-HDIDF 103 lfaevvklvaskkdfelKrlgLRrmVYLylkllaeespDGklhlaiLatn +++e+v+l++s++ +++K++g YL++++l +++++ l++L++n mKIAA0899 104 GHMEAVNLLSSNR-YTEKQIG-----YLFISVLVNSNSE----LIRLINN 143 tikkDLqspNplirglALrtLssirvpelardlapdikkllvdespnpyV +ik+DL s+Np ++glAL+++++++++e+a+++a +i+k+lv ++++++V mKIAA0899 144 AIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSV 193 RKkAalailkLyrkdpelvernglvedlkelLslDsnpgVvsaAVaalde +++Aal++l+Lyr +p+lv+++++++++++lL+ D++ gVv+aA+++++ mKIAA0899 194 KQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN-DQHLGVVTAATSLITT 242 ickqnpdllllfrDlklvplLvrfvrllrklltalsdlnewggnsvpqpf ++ +np+ ++++ +l v+ rl+r++++a +dl+++++++vp+p+ mKIAA0899 243 LAQKNPEEFKTSV-----SLAVS--RLSRIVTSASTDLQDYTYYFVPAPW 285 llvkLiklLrlylrkdlvepdprlGlngkdlserltfilqlvntkvelsk l vkL+ r +l+ ++++pdp++ + +l e+l+ il++++ ++++k mKIAA0899 286 LSVKLL---R-LLQ-CYPPPDPAV---RGRLTECLETILNKAQEPPKSKK 327 vqhknvsnavlfelaltisdldsapelivlainkLlvlLlssdpnlrYva vqh+n++navlfe++++i+++ds+p+l+v+a+n+L+++L ++++nlrY+a mKIAA0899 328 VQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLA 377 LrnlnkivmsekrpskeeglekavqrhrlkiffclstdddisIrlraLdl L++++++++se++++ av++h ++++ l+t++d+s+r+ra+dl mKIAA0899 378 LESMCTLASSEFSHE-------AVKTHIETVINALKTERDVSVRQRAVDL 420 LykLvdesNvkeivkeLkeyveeadndehedtfvkiavvaiirlacekdn Ly+++d+sN+ +iv e+++y+e+ad + +++++v ++++++ek mKIAA0899 421 LYAMCDRSNAQQIVAEMLSYLETAD-Y-----SIREEIVLKVAILAEK-- 462 YqfptdaewcidvLleLLkltagsyvvaeaivvqiidiirkyPelreyaV ++ d++w++d++l+L++ +ag+yv +e++++ +i+i+++++++++ya+ mKIAA0899 463 --YAVDYTWYVDTILNLIR-IAGDYVSEEVWYR-VIQIVINRDDVQGYAA 508 sqiitlLaallesiesmpearaaaiWilGEygelipdiapceesepseve +t+++al++++++ ++++++ +ilGE+g+li ++ +s p+ mKIAA0899 509 ---KTVFEALQAPACH-ENLVKVGGYILGEFGNLIAGD---PRSSPL--- 548 sdidllreiaenfslenlevraqlLtalvKLgltkpdikqQeeiqpveel ++++++++f+l++ +ra+lL++++K+ +++p+ v+ mKIAA0899 549 ---IQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE---------VKAT 586 iqsvls..lalnssdnelElRDRAreylrllslad<-* iq+vl ++++l ++d +El++RA+eylrl + a+ mKIAA0899 587 IQDVLRsdSQLKNAD--VELQQRAVEYLRLSTVAS 619 Alpha_adaptinC2: domain 1 of 1, from 735 to 848: score 139.0, E = 8.3e-38 *->pkpawlpsivvyessgLqIgltferrgpespglgritltftNkssqp ++++++++v++e++ LqIgl++e+r ++lgr+ ++++Nk+s++ mKIAA0899 735 ARFVCKNNGVLFENQLLQIGLKSEFR----QNLGRMFIFYGNKTSTQ 777 itnfvfqaAVPKslkLqLqpqsgsvlpaggpgaqPaitQvlrvsnpqdnk + nf++++ + +l++ L++q+++v p++++gaq ++Qv ++++++d++ mKIAA0899 778 FLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQ--VQQVVNIECISDFT 825 kplrlrikltYnlggqsvqeqgevsklP<-* ++++l+i+++Y +++q+++ klP mKIAA0899 826 EAPVLNIQFRYG---GTFQNVS--VKLP 848 Alpha_adaptin_C: domain 1 of 1, from 854 to 966: score 339.6, E = 3.5e-98 *->FFePTeMaaedFFqRWKqLSapqQeaQKIFkAahPlDlevtkaKLlG FF+PTeMa++dFFqRWKqLS+pqQe+Q+IFkA+hP+D+e+tkaK++G mKIAA0899 854 FFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIG 900 FGsaLLddVDPNPdNfVcAGIIhTqtqQvGCLlRLEPNkQAqMYRLTlRt FGsaLL++VDPNP+NfV+AGIIhT+t+Q+GCLlRLEPN+QAqMYRLTlRt mKIAA0899 901 FGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRT 950 SKdTVsreLcdLLtdQ<-* SKdTVs++Lc+LL++Q mKIAA0899 951 SKDTVSQRLCELLSEQ 966 //