hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05750/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0898  ( 1006 res)   mbg05750

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BBC      B-Box C-terminal domain                         92.8      4e-23   1
MATH     meprin and TRAF homology                        60.2    2.7e-13   1
BBOX     B-Box-type zinc finger, protein interaction     54.8    1.1e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BBOX       1/1     141   183 ..     1    51 []    54.8  1.1e-11
BBC        1/1     183   299 ..     1   132 []    92.8    4e-23
MATH       1/1     326   429 ..     1   123 []    60.2  2.7e-13

Alignments of top-scoring domains:
BBOX: domain 1 of 1, from 141 to 183: score 54.8, E = 1.1e-11
                   *->eraplCeeHgdeepaeffCveedgallCrdCdea.geHqanklfrgH
                       ++++Ce+H+  e++ +fC +++ +++C +C +++g+H      +gH
   mKIAA0898   141    NEKDKCENHH--EKLSVFC-WTCKKCICHQCALWgGMH------GGH 178  

                   rvvll<-*
                   ++++l   
   mKIAA0898   179 TFKPL    183  

BBC: domain 1 of 1, from 183 to 299: score 92.8, E = 4e-23
                   *->qreaLeelleklrkkaeelekalkqldsiiqevegGqvdenaeevea
                      + e++e++++k++++ ++l+++l++l+s++qeve     +n e v++
   mKIAA0898   183    LAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVE-----RNVEAVRN 224  

                   eikaafdeLrnaLnerkkqLledLeevkenklkkLeqQlesltqkqekle
                     +++++e+rna++    +++++L+++ +nkl++L+ Q++sltq +e le
   mKIAA0898   225 AKDERVREIRNAVE----MMIARLDTQLKNKLITLMGQKTSLTQETELLE 270  

                   hainfaeeaLnsgdptelLlskkliierlqellkq<-*
                   ++++ +e      +++el++++ +i +++q+++++   
   mKIAA0898   271 SLLQEVE------SKSELISKSSEILMMFQQVHRK    299  

MATH: domain 1 of 1, from 326 to 429: score 60.2, E = 2.7e-13
                   *->vlshtfknvSkfKLateegesyfSpseehkggfnipWrlkikrkG..
                      +  ++f+ ++         + ++Sp+  +    +++Wrlk++++G++
   mKIAA0898   326    FVLENFSTLR------QRADPVYSPPLQV---SGLCWRLKVYPDGng 363  

                   .gkngflglyLhCekeeceerlevkWsieaeftlkLvsqnGksl.rsvir
                     ++ +l+++L    ++ e     + + e ++++   s+n + +++    
   mKIAA0898   364 vVRGYYLSVFLELSAGLPE-----TSKYEYRVEMVHQSCNDPTKnI---- 404  

                   hvkfaskkdthvFekpsgwGfskFisWddL<-*
                         + + + Fe +++wG+++F+++d L   
   mKIAA0898   405 -----IREFASDFEVGECWGYNRFFRLDLL    429  

//