hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05750/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0898  ( 1006 res)   mbg05750

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-B_box B-box zinc finger                               61.9    1.4e-14   1
MATH     MATH domain                                     25.3     0.0006   1
K-box    K-box region                                   -24.7       0.34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-B_box   1/1     143   183 ..     1    46 []    61.9  1.4e-14
K-box      1/1     175   254 ..     1   103 []   -24.7     0.34
MATH       1/1     328   450 ..     1   150 []    25.3   0.0006

Alignments of top-scoring domains:
zf-B_box: domain 1 of 1, from 143 to 183: score 61.9, E = 1.4e-14
                   *->ervCpeHgekaslfCedDqalLCvvCdes.geHsanklargHtvvpl
                      +++C++H+ek+s+fC+++ +++C +C++++g+H       gHt++pl
   mKIAA0898   143    KDKCENHHEKLSVFCWTCKKCICHQCALWgGMH------GGHTFKPL 183  

                   <-*
                      
   mKIAA0898     -     -    

K-box: domain 1 of 1, from 175 to 254: score -24.7, E = 0.34
                   *->yqkssgnsslwesntqnwqqEaaKLkaqienLQnnrnqRhllGEdLg
                       + ++ ++ l+e     + q++ K+++++ +L+     R+l+     
   mKIAA0898   175    HGGHTFKP-LAEI----YEQHVTKVNEEVAKLR-----RRLM----- 206  

                   sLslKELqqLEqqLEkgLkhIRsrKnqllldqieelqkKErelqeeNkaL
                        EL++L q++E+ +  +R+ K++     +e     E+++  + ++L
   mKIAA0898   207 -----ELISLVQEVERNVEAVRNAKDE---RVREIRNAVEMMIARLDTQL 248  

                   rkkiee<-*
                   + k+     
   mKIAA0898   249 KNKLIT    254  

MATH: domain 1 of 1, from 328 to 450: score 25.3, E = 0.0006
                   *->iknfSslkkegeeyytspyeerfnipWrllriyrnggge.rhgkflg
                       +nfS l++  + +y+ p   + +++Wr l++y++g+g  r g +l+
   mKIAA0898   328    LENFSTLRQRADPVYS-PPLQVSGLCWR-LKVYPDGNGVvR-GYYLS 371  

                   lyLhClkeekdcptienlkWsieteftlklvsdnGksirRmssvtlskkp
                   ++L +  +         l+ +   e++  +v ++ ++         +k++
   mKIAA0898   372 VFLELSAG---------LPETSKYEYRVEMVHQSCND--------PTKNI 404  

                   kdatnnshvFdkptkgegwgksGfkkFisWddLeddyngylv..dDsiti
                          + F    + e   ++G+ +F+++d L +  +gyl++++D+++ 
   mKIAA0898   405 I------REFAS--DFEVGECWGYNRFFRLDLLAN--EGYLNrqNDTVIL 444  

                   EaeVkI<-*
                      V     
   mKIAA0898   445 RFQVRS    450  

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