hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/meh/meh02302/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0897  ( 1140 res)   meh02302

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                           122.0    6.7e-32   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/3     791   860 ..     1    67 []    47.4  1.9e-09
SAM        2/3     897   964 ..     1    67 []    36.9  2.8e-06
SAM        3/3     985  1057 ..     1    67 []    38.7  7.8e-07

Alignments of top-scoring domains:
SAM: domain 1 of 3, from 791 to 860: score 47.4, E = 1.9e-09
                   *->vs.wspesVaeWLesigleq..YadnFrkngidgeelllltseedLk
                      + +w+ ++V  WLe        Y+ + r+n  +g+++ +l++ e   
   mKIAA0897   791    FAqWDGPTVVSWLELWVGMPawYVAACRANVKSGAIMSALSDTEIQR 837  

                   elGitllGhRkkIlsaiqklkeq<-*
                   e+Gi+++ hR+k+  aiq++ +    
   mKIAA0897   838 EIGISNALHRLKLRLAIQEMVSL    860  

SAM: domain 2 of 3, from 897 to 964: score 36.9, E = 2.8e-06
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       + +++    eWL s+gl+qY++ F+++ +d ++l +lt  ++  +l
   mKIAA0897   897    GDmNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHL 943  

                   GitllGhRkkIlsaiqklkeq<-*
                   ++ +  hR  ++++i +lk     
   mKIAA0897   944 KMVDSFHRTSLQYGIMCLKRL    964  

SAM: domain 3 of 3, from 985 to 1057: score 38.7, E = 7.8e-07
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.....see
                      v  w++++V  W +sigl +Ya n+ + g++g++l+l ++ ++++++
   mKIAA0897   985    VLvWTNDQVVHWVQSIGLRDYAGNLHESGVHGALLALDEnfdhnTLA 1031 

                   dLkelGitllGhRkkIlsaiqklkeq<-*
                   + +++  +++++R+   ++++ l++    
   mKIAA0897  1032 LVLQIPTQSTQARQVMEREFNNLLAL    1057 

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